PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P13040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 415aa    MW: 45914.3 Da    PI: 9.9408
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P13040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-351322242102
                            HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
           HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                            Fl+k+y++++d+++++++sw  ++ ++fvv+ ++efa++vLp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+k
  GSMUA_Achr7P13040_001 132 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPSEFARDVLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRK 210
                            9********************6667*****************************************999.........********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  89 gkkellekikrkks 102
                            g+kell++i+r+k+
  GSMUA_Achr7P13040_001 211 GEKELLCEIHRRKT 224
                            ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-36124217IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-58128222IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.12E-31129222IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-19132155IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-30132222IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-19171183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340172196IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-19184196IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MYTFRESSLR SLGTVIGGND DLGCRKDING LTEYLHCRLK RKPPSPYNIS SLLTPQHRPT  60
HILPLTPRGY EVCIKPPRQL KLHLHTPTPT PTPSAVVCSK MERCWGGGGG GAAAAGVAAA  120
VSEPHKPVPA PFLTKTYQLV DDPATDHIVS WGDDRVSTFV VWRPSEFARD VLPNYFKHNN  180
FSSFVRQLNT YGFRKVVPER WEFANEFFRK GEKELLCEIH RRKTCSSSSS SFPLASSLPL  240
FPPFHHLEDY RLASPHWHDA SSRLRRRCWR RTRGCGGATR PCCRSCSTCG SFITTSSTLC  300
RTTSAPSPPA PPQLLPTSSC PQPINGEGVT TPAVPPPAAR SPLPRIHRLL HSTTQQMTRT  360
LAATKRAAVR DPSSLGCHFT AVLAAATSED FISTSQPRPS PDRVWFESMK ATYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A7e-221282247112Heat shock factor protein 1
5hdn_A7e-221282247112Heat shock factor protein 1
5hdn_B7e-221282247112Heat shock factor protein 1
5hdn_C7e-221282247112Heat shock factor protein 1
5hdn_D7e-221282247112Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409313.11e-156PREDICTED: heat stress transcription factor B-4c isoform X2
TrEMBLM0TH410.0M0TH41_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P13040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-59heat shock transcription factor B4