PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P12560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 333aa    MW: 37577.3 Da    PI: 8.3196
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P12560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-065193440
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           r C  + +++++++C+  + +lC+ C ++ H+       H++v
  GSMUA_Achr7P12560_001 51 RACYGCLRHRARWYCTAHHAFLCQICDSSVHSAnplvrrHQRV 93
                           6799999999*********************667888888876 PP
2CCT69.96.4e-24276319144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  GSMUA_Achr7P12560_001 276 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 319
                            9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-74895IPR000315B-box-type zinc finger
PROSITE profilePS501199.8554895IPR000315B-box-type zinc finger
CDDcd000212.17E-75195No hitNo description
PfamPF062034.1E-18276318IPR010402CCT domain
PROSITE profilePS5101716.122276318IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRADAGFYIG AIFLIGNSPT LDLFQFSAAA MDDSEKQQRP SPDAVGGKAA RACYGCLRHR  60
ARWYCTAHHA FLCQICDSSV HSANPLVRRH QRVRLTTTSL VGEPGESSPS WLEGFERKAR  120
TSRPQHRTNM MAAGDLPEQL VDASVDEDDD GEQEEELSYC VPIRNPLFAS FCSPPPPLDN  180
SNATSSVAEN TGFSIEDDAR HVKMEQPDPK LRLDYESIIM AWSSQGSSPW TDGERPQINV  240
DNCWPDYMDM WTGSGMETER ACHGGEIGVY LGDGKREARV TRYREKRRTR LFSKKIRYEV  300
RKLNAEKRPR MKGRFVKRTP ALASLTRKKP VSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286302RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409257.11e-100PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X1
RefseqXP_009409258.11e-101PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X2
TrEMBLM0TGZ40.0M0TGZ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P12560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.12e-28B-box type zinc finger protein with CCT domain