PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P12520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 272aa    MW: 31149.4 Da    PI: 6.2374
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P12520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +l++ +   G  +W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr7P12520_001 14 KGPWTAEEDRKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding51.32.7e-1670111447
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             + +E++  ++++ +lG++ W++Ia++++ gRt++++k++w+++
  GSMUA_Achr7P12520_001  70 LSDDEEKMVIELHSRLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                            5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-20562IPR009057Homeodomain-like
PROSITE profilePS5129414.177961IPR017930Myb domain
SuperFamilySSF466894.49E-2711108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002494.5E-141461IPR001005SANT/Myb domain
CDDcd001671.88E-81661No hitNo description
PROSITE profilePS5129426.52362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2463116IPR009057Homeodomain-like
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
CDDcd001677.30E-1171112No hitNo description
PfamPF002499.6E-1571111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDRKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDDEEKMVIE LHSRLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRRMG  120
IDPMTHKPIP SADEFPHQQQ QHMEAEEDSI MTSRFTPTET EAFLCKSPGF CTDEVPMMEP  180
HEMIVPYAVA ASSASCAALP SSSCSSVDSS FEPENLQLPF VEWPESIWLW GADDFGGWDS  240
IYDELDGKLG LHPFNQRQRA VLDQESWKFE LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409253.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-88MYB20_ARATH; Transcription factor MYB20
TrEMBLM0TGZ00.0M0TGZ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P12520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-92myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]