PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P12440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-X1
Protein Properties Length: 903aa    MW: 97083.5 Da    PI: 7.9294
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P12440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.72.1e-07167185119
               zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                            CG+H+C+++CH+G C pC+
  GSMUA_Achr7P12440_001 167 CGRHRCERICHTGACSPCR 185
                            ******************6 PP
2zf-NF-X117.87e-06232249118
               zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                            CG+H C+++CH+GpC++C
  GSMUA_Achr7P12440_001 232 CGNHFCGEKCHPGPCGEC 249
                            ****************** PP
3zf-NF-X118.73.7e-06356374119
               zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                            CG+H+Cq lCH G CppC 
  GSMUA_Achr7P12440_001 356 CGQHSCQLLCHSGHCPPCL 374
                            ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.21E-488150No hitNo description
SMARTSM004380.023112130IPR000967Zinc finger, NF-X1-type
PfamPF014226.6114129IPR000967Zinc finger, NF-X1-type
CDDcd060081.10E-10157205No hitNo description
SMARTSM004380.0011167186IPR000967Zinc finger, NF-X1-type
PfamPF014227.6E-6167185IPR000967Zinc finger, NF-X1-type
CDDcd060088.37E-10222267No hitNo description
SMARTSM004383.6E-4232251IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033232249IPR000967Zinc finger, NF-X1-type
PfamPF0142216317328IPR000967Zinc finger, NF-X1-type
CDDcd060085.03E-9346398No hitNo description
SMARTSM004381.1E-4356375IPR000967Zinc finger, NF-X1-type
PfamPF014221.1E-4356373IPR000967Zinc finger, NF-X1-type
CDDcd060086.82E-5403451No hitNo description
SMARTSM004380.015413431IPR000967Zinc finger, NF-X1-type
PfamPF014226.5413430IPR000967Zinc finger, NF-X1-type
SMARTSM004380.68466498IPR000967Zinc finger, NF-X1-type
PfamPF014220.13466481IPR000967Zinc finger, NF-X1-type
PfamPF0142222500526IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16507528IPR000967Zinc finger, NF-X1-type
PfamPF014241.0E-5608672IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MVRRSAPIWS CSSCYSIFHL HCIRKWARSP TSSDAPSASV DGSGDRAGWR CPGCQSVQSV  60
LAKDLTYSCF CGSRGDPPND LYLTPHSCGG PCRKPLDRTP AVPDADNDEF RCPHVCVLQC  120
HPGPCPPCKA FAPRRPCPCG KKTIVRRCSD RESPLTCRQQ CDRLLSCGRH RCERICHTGA  180
CSPCRVLVTA SCFCNKKIEI VLCGDMVVKG DVQTIGDGVF SCNSICGRVL SCGNHFCGEK  240
CHPGPCGECE LLPEKIKSCY CGKTKLENGR KNCPPCMVLV DQRCQCRSSN RTVECYKVSR  300
DAEIFVCDKS CGKKKNCGRH RCNERCCPLS RPGGELLGSD WDPHLCSMPC GKRLRCGQHS  360
CQLLCHSGHC PPCLETTFTD LMCACGKTSI PPPVPCGTPA PSCPHPCLVP QPCGHPASHT  420
CHFGDCPPCS VPVAKECVGG HVLLRNIPCG SKDIRCNQLC GKTRQCGIHA CGRTCHPPPC  480
DASFASGSGS GAKSSCGQVC GAPRRDCKHT CSAPCHPSEP CPDLRCDFPV TITCSCGRIT  540
ASVPCSAGGS SSGFHVDTVL EASILQKLHV PLQPVEANVK KIPLGQRKLS CDDESSELLS  600
DLFRREPKWV LAVEERFKFL VLGKTKGASG GLKVHVFCPM LKEKRDAIRH IAERWKLAVQ  660
AAGWEPKRFL VVHVTPKSRP PARILGFKPG VPITAQPPAF DPLVDMEPRL VVSMLDLPRD  720
ADISALVLRF GGECELVWLN DKNALAVFGD PARAATALRR LDHGSVYQGA AVVSSLPVLN  780
AWGTGPKEGG VASKGSNSWK KVVSSESDSW GGEWSSSGAD ATVPSWKPTE AAPISTSSNP  840
WSVLDSETTM NSVSTESAAD RIMVSGVKGG SPETDGVVST EQGAAVGNVE MHEEVDDWEE  900
AYE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409246.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM0TGY20.0M0TGY2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P12440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1