PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P10520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 1285aa    MW: 143344 Da    PI: 5.1782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P10520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-17795841148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g WT++Ede l +av+ + g++Wk+Ia+ ++ +Rt+ qc +rwqk+l
  GSMUA_Achr7P10520_001 795 KGGWTPQEDETLRKAVEAYKGRCWKKIAEFFP-HRTEVQCLHRWQKVL 841
                            688*****************************.************986 PP
2Myb_DNA-binding53.17.3e-17847893148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+W +eEde+++ +v+++G   W+ Ia+ ++ gR +kqc++rw+++l
  GSMUA_Achr7P10520_001 847 KGPWMPEEDEKIISLVAKYGATKWSIIAKSLP-GRIGKQCRERWHNHL 893
                            79******************************.*************97 PP
3Myb_DNA-binding48.61.8e-15899942146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +++WT eE++ l +a+  +G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr7P10520_001 899 KDAWTVEEELVLMNAHCVHGNK-WAEIAKVLP-GRTDNSIKNHWNS 942
                            679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF125523.6E-114478IPR022212Domain of unknown function DUF3741
PfamPF143097.7E-34503659IPR025486Domain of unknown function DUF4378
PROSITE profilePS5129417.325790841IPR017930Myb domain
SuperFamilySSF466894.67E-15791850IPR009057Homeodomain-like
SMARTSM007175.6E-16794843IPR001005SANT/Myb domain
PfamPF002494.4E-15795841IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-19797851IPR009057Homeodomain-like
CDDcd001672.60E-13798841No hitNo description
PROSITE profilePS5129430.21842897IPR017930Myb domain
SuperFamilySSF466894.77E-30844940IPR009057Homeodomain-like
SMARTSM007171.2E-15846895IPR001005SANT/Myb domain
PfamPF002493.5E-16847893IPR001005SANT/Myb domain
CDDcd001678.09E-14849893No hitNo description
Gene3DG3DSA:1.10.10.601.2E-26852901IPR009057Homeodomain-like
PROSITE profilePS5129421.475898948IPR017930Myb domain
SMARTSM007178.1E-14898946IPR001005SANT/Myb domain
PfamPF002491.4E-13899942IPR001005SANT/Myb domain
CDDcd001673.60E-10901944No hitNo description
Gene3DG3DSA:1.10.10.601.4E-21902948IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1285 aa     Download sequence    Send to blast
MTSERAAIEK QSRFGRSKSH VNWASRHQLV DKKLNVARDS IPNDLGRDAA LYKSKEFMEM  60
MQLFSENKEL FLKFLQDPTF IFTDYTQEQA ASISAMKLTK SGSFPAAGWS HRNRPLSLDD  120
KQEENGSIDA PSSTCNAVED GAHSMESMAH PDAANMLKAE SEALDRAELG FAETKNTKNV  180
GNVSTRFKVL KQKIKYIIKE NKKEHQRISM DSILHKIPYG EKVSENVKKE AESLWHRRLG  240
KSISRAKKIG LLSSSNKQTL RSIRKSSSLT ESLGRYSQLL ESVSSTESKR SPDMSMMIKE  300
DTDSLRQKTP KLLKRIFSLP ELPTGSASKD LRNEVSNSQL LVRPTSRAVA RSTTVKTCDT  360
SQLDSVAALT SNEHSIEPEK LVEHFMEEDV SGIPVETEEP SVPIDEQEQS IVDEDSFSSL  420
DGSKILVTDS KVHEDTTSPT GETPQSETEE SELMTIAEAD FGIDASLTME NLEQQQIEET  480
PTQTKFSEFS SFHIQVHEGE EAEFEYVRNI LMMSGFSSEE AFGEWHLPDQ PVDPSLFEDS  540
LDDLETAAAE PNITLKHMLL FDLINEVLLE TYDTSFAYCP WVLHADCQIR PLTVGHRVLE  600
EVWAVISKHL SYQLLLDQTV ESTVARDFTR NDGWMNLQHD TEYVALDLED LLLEDLIDEI  660
VLEFTGLSCS SMLHYYFISP PFYLSLTVCF NGRGFLSNDL PVLGSPASFF RFEGFESDLE  720
LPFRPLRSSS PGGHRGFFGM KIEQSCVENK QSAAASSSSL SEGSYGMTRM SPAVCSRPAP  780
SPSGRRTSGP IRRAKGGWTP QEDETLRKAV EAYKGRCWKK IAEFFPHRTE VQCLHRWQKV  840
LNPELIKGPW MPEEDEKIIS LVAKYGATKW SIIAKSLPGR IGKQCRERWH NHLDPTIKKD  900
AWTVEEELVL MNAHCVHGNK WAEIAKVLPG RTDNSIKNHW NSSLKKKLDF FMASGKLPLF  960
PKPEMLDDSE AITNLDGRHS LLSLSEGSDT ITRAFSGSVC SFDSDSKTEA LTNLTVRGIN  1020
DPDTGCSKHT STSDICTRSD PETELAECSN SGENDQLNDT LQPTKSKLET PPDFGSLFYK  1080
PFQLEDVCLS AASTLLTTHD SIQQSYCSAI VTSPNSYLTP PSVTGRNSIQ SVESVLKSAA  1140
RSFSNTPSIF RRTKREAETM FASDSSSSQP DRLKILDTSG TTVEGKSGDN SEATDSSKFS  1200
SSPCDSGTIL YNGKSFNVSP AYRLRSKRSA IVKSVEKQLD FTFKENDCDG NIEHLNLPTD  1260
SSSHSSNTIL PSIQERKLTE PPIGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-677949485159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-677949485159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684329.10.0PREDICTED: uncharacterized protein LOC103991807
TrEMBLM0TGE00.0M0TGE0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P10520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-126myb domain protein 3r-5