PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P09680_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 202aa MW: 22357.1 Da PI: 5.0829 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 7.1e-31 | 92 | 149 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYG+K+vk+s++pr+YYrC+++gC vkk+ver+++dp++v+++Yeg Hnh GSMUA_Achr7P09680_001 92 LDDGFKWRKYGKKSVKNSPNPRNYYRCSTEGCGVKKRVERDRDDPRFVITIYEGVHNH 149 59******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.9E-32 | 81 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-27 | 84 | 150 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.1 | 87 | 152 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-35 | 92 | 151 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-25 | 93 | 149 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MATAALDIGG LSCSPVFLFD DAPKLCTTDE FDVSEYVAVF DESSVTESSA VAGDVYCPTD 60 DTMMSCRNET KRMKVGDGCR IGFRTKSEVE ILDDGFKWRK YGKKSVKNSP NPRNYYRCST 120 EGCGVKKRVE RDRDDPRFVI TIYEGVHNHI SPCTLCYNYA HLPLAPSASA PWGRAMAGAP 180 TISSSSSTCT AQWLESFFQD DM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 82 | 153 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 82 | 153 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408926.1 | 1e-151 | PREDICTED: probable WRKY transcription factor 50 isoform X1 | ||||
Swissprot | Q8VWQ5 | 6e-39 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | M0TG56 | 1e-149 | M0TG56_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P09680_001 | 1e-150 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 3e-41 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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