PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P09240_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26802.7 Da PI: 9.9966 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9e-09 | 13 | 47 | 3 | 39 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W++ E ++ +a +++G++ Wk++a+t++ +++ GSMUA_Achr7P09240_001 13 QWSKVEVVQFFEAYHKYGKD-WKKVAATLP-NKSSDA 47 6*****************99.*********.998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.77E-10 | 9 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-4 | 10 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-7 | 13 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-5 | 13 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-6 | 14 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MQKRSLSDML GSQWSKVEVV QFFEAYHKYG KDWKKVAATL PNKSSDAVEA LYNMNKAYLS 60 LPEGSANATG LIAMMIDHYN ILEGGDSDQE NYRFLRTYTR PQKHGRVSQI VLPKGSKGLV 120 SLQKQSIPSS SGCMPSLRKI HFAGKYYSGG KIRCVGKRTP RFPVAFLSEN IIRYNLTSSN 180 KQCSKSKAEV FADEGMHLAA LALIEASQIF GSPLGSQSRD RVNEQIGSPP VLSGDSKVCP 240 IQS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018684194.1 | 1e-161 | PREDICTED: protein ALWAYS EARLY 2-like isoform X1 | ||||
Refseq | XP_018684195.1 | 1e-161 | PREDICTED: protein ALWAYS EARLY 2-like isoform X2 | ||||
Refseq | XP_018684196.1 | 1e-161 | PREDICTED: protein ALWAYS EARLY 2-like isoform X3 | ||||
Refseq | XP_018684197.1 | 1e-161 | PREDICTED: protein ALWAYS EARLY 2-like isoform X4 | ||||
TrEMBL | M0TG12 | 0.0 | M0TG12_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P09240_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6230 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-49 | DNA binding |