PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P08850_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 388aa MW: 41741.7 Da PI: 8.0005

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P08850_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.7e-31	108	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+ GSMUA_Achr7P08850_001 108 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHNHP 167 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-33	93	169	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-28	101	169	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	103	169	IPR003657	WRKY domain
SMART	SM00774	5.3E-38	108	168	IPR003657	WRKY domain
Pfam	PF03106	1.6E-27	109	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MGEVREENQR LKMILAQIVK DYQYLQKQYF DILQQEQSKK ALETAEPDGS TISPDNSSDD 60 PKEEEPGEPW PPSKILKNPR NGDDEGSQQP QVKKARVSVR ARCDAPTMND GCQWRKYGQK 120 VAKGNPCPRA YYRCTVAPGC PVRKQVQRCA EDMSILITTY EGTHNHPLPL SATTMACTTA 180 AAASMLMTGS TSLHGLNFGM LGSSNARQPY LPIPSISSTP SYPTITLDLT APPSATSQLN 240 QFTRFPRQSQ DSFYHSILQK AINSVAATTT TAVPSPSPNQ HALTDTIAKA ITSDPSFQSA 300 IAAAITSYVG GQPGREGASH DLLKLGGHFN SSAVAQLSAA VNGCASSYLN RSSSSSSSHQ 360 PNLPLLQPPL AFPTPKTASA DRNSESID

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MGEVREENQR LKMILAQIVK DYQYLQKQYF DILQQEQSKK ALETAEPDGS TISPDNSSDD  60
PKEEEPGEPW PPSKILKNPR NGDDEGSQQP QVKKARVSVR ARCDAPTMND GCQWRKYGQK  120
VAKGNPCPRA YYRCTVAPGC PVRKQVQRCA EDMSILITTY EGTHNHPLPL SATTMACTTA  180
AAASMLMTGS TSLHGLNFGM LGSSNARQPY LPIPSISSTP SYPTITLDLT APPSATSQLN  240
QFTRFPRQSQ DSFYHSILQK AINSVAATTT TAVPSPSPNQ HALTDTIAKA ITSDPSFQSA  300
IAAAITSYVG GQPGREGASH DLLKLGGHFN SSAVAQLSAA VNGCASSYLN RSSSSSSSHQ  360
PNLPLLQPPL AFPTPKTASA DRNSESID

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	95	169	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408832.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X1
Refseq	XP_009408833.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X2
Swissprot	A0A3Q7GFB5	2e-89	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	M0TFX3	0.0	M0TFX3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P08850_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-52	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]