PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P08020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LSD | ||||||||
Protein Properties | Length: 179aa MW: 19138.4 Da PI: 8.4368 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 48.5 | 1.4e-15 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YPrGA++VRCa+C+t+ GSMUA_Achr7P08020_001 7 CNGCRTILLYPRGATNVRCAICNTM 31 ***********************96 PP | |||||||
2 | zf-LSD1 | 40.4 | 5e-13 | 52 | 76 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+ GA++VRC++C t+ GSMUA_Achr7P08020_001 52 CYGCRTLLMYTSGATNVRCSCCGTI 76 99********************997 PP | |||||||
3 | zf-LSD1 | 41.5 | 2.2e-13 | 90 | 114 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L YP GApsV+Ca+C++V GSMUA_Achr7P08020_001 90 CGQCHTTLIYPCGAPSVKCAICHFV 114 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.6E-15 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 6.9E-4 | 5 | 113 | No hit | No description |
Pfam | PF06943 | 2.1E-13 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 1.15E-5 | 20 | 112 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 3.2E-15 | 49 | 78 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.2E-11 | 52 | 76 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.0E-9 | 88 | 115 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.5E-12 | 90 | 114 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MQSQLVCNGC RTILLYPRGA TNVRCAICNT MTPTLPAGID MAQQMEMAQI ICYGCRTLLM 60 YTSGATNVRC SCCGTINMAR PANQNAYLNC GQCHTTLIYP CGAPSVKCAI CHFVTNAGTM 120 RVPIPEAQRP NETIPMRPST SAPPSEAQNM TVVVENPMSV NQSGKLVSNV VVGVTTGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009407702.1 | 1e-128 | PREDICTED: protein LOL2-like | ||||
Swissprot | Q2QMB3 | 4e-68 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | M0TFP2 | 1e-126 | M0TFP2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P08020_001 | 1e-127 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-59 | LSD family protein |
Publications ? help Back to Top | |||
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