PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P06640_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 340aa MW: 39845.8 Da PI: 6.6158

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P06640_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.7	3.8e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPtdeelv++yL+kkv+++k++l +vik+vd+yk+ePwdL++ ++ a e++ewyfFs++dkky+tg+r+nrat++g+Wka GSMUA_Achr7P06640_001 7 VPPGFRFHPTDEELVDYYLRKKVAARKIDL-DVIKDVDLYKIEPWDLQEicRIGAeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKA 93 69**************************.9***********954555442556************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tg+dk+++s k++lvg++ktLv+ykgrap+g+k+dW+mheyrle GSMUA_Achr7P06640_001 94 TGRDKPIYS-KHRLVGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 136 *****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-60	5	162	IPR003441	NAC domain
PROSITE profile	PS51005	59.405	7	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MNTISHVPPG FRFHPTDEEL VDYYLRKKVA ARKIDLDVIK DVDLYKIEPW DLQEICRIGA 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YSKHRLVGMR KTLVYYKGRA 120 PNGQKSDWIM HEYRLETSEN GPPQAILKCH EEGWVVCRVF KKRVPTARKA SDELPWYDEQ 180 GSFMQDIDSP KRTMPQPAME YHHHHQLYSY KREIKLHYRS PHEALDHELP PVEPPMIFSY 240 LNHGDSLQRL IFSENEAVQP RHQLQATTTD NNDENVSQAS DQVTDWRILD KFVAAQLSHD 300 GSKKPIYSDE DDLLQVADEQ EVAMEFPSTS TSSCQMYPWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-51	6	163	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	192	DSPKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407850.1	0.0	PREDICTED: NAC domain-containing protein 7-like
Refseq	XP_009407851.1	0.0	PREDICTED: NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-118	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	M0TFA4	0.0	M0TFA4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P06640_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12102	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-110	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]