PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P06400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 714aa    MW: 76095.7 Da    PI: 9.4802
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P06400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08517542227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt++C+ +     Ck+G++C+FaHg+
  GSMUA_Achr7P06400_001 517 KTRICNKYNTAEGCKFGEKCHFAHGE 542
                            8***********************96 PP
2zf-CCCH30.75.4e-10681705126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ykt+lC +f + G C +GdrC+FaHg
  GSMUA_Achr7P06400_001 681 YKTKLCENFGK-GACTFGDRCHFAHG 705
                            9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1586391.22E-3843161IPR005491ENT domain
PROSITE profilePS5113824.8749136IPR005491ENT domain
SMARTSM011912.6E-3849122IPR005491ENT domain
PfamPF037356.7E-3051119IPR005491ENT domain
Gene3DG3DSA:2.30.30.1404.0E-5242279No hitNo description
SuperFamilySSF637489.53E-8244282No hitNo description
CDDcd045080.00623247298No hitNo description
PROSITE profilePS5010312.042449477IPR000571Zinc finger, CCCH-type
SMARTSM003564.8449476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5450475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6451474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-7514546IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986515543IPR000571Zinc finger, CCCH-type
SMARTSM003560.0078515542IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13516546IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5517542IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.28E-15583657IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.0E-16586655IPR004088K Homology domain, type 1
SMARTSM003221.9E-12586656IPR004087K Homology domain
PROSITE profilePS5008414.865587651IPR004088K Homology domain, type 1
PfamPF000131.0E-11589653IPR004088K Homology domain, type 1
CDDcd001052.74E-13591651No hitNo description
Gene3DG3DSA:4.10.1000.108.6E-16678711IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8680710IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.173680707IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6680706IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7681705IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MEFDPSDSSG TDDDLPPPHQ NRGIRGGQVT GNGRATIGAI PYARMQNDME TQIHRLEQEA  60
YSSVLRAFKA QSDAITWEKE SLITELRKEL RVSDEEHREL LSRVNADDII RRIREWRQAG  120
GLQSGMFNNV QPDVPVPSPT ISASRKRQRT SQPVPSLSLD APSPGLQSQP VVAPMQPSSS  180
AAKRGTATAA KGKKPKSAQT LPGVSSMKSM QYPSAGPSGR SQVASRNSSG APMIDPAKKT  240
PYDPLIGRKV MTRWPEDNNF YEAVITDYNP VEGLHALVYD IDTKDETWEW VNLKDISPDD  300
IRWEGGDPGI SHRPGQGGVK RSTGRGGGIP GAGRGRGTMK NQAKKQFPPS QNGIGKKRAG  360
DIEILHTETL IKEVEKVFGA SHPDPLEIEK AKKLLKEHEQ SLIDAIAMLA DASDGESAAR  420
KRGRPEVANG GGAGSKRLRE TDSFQSGIGS KSKPCTKFFS TAGCPFGEGC HFLHYVPGGL  480
QAVAQMTNLG NPALGPPSRN PVAHPAIHDG APVPPVKTRI CNKYNTAEGC KFGEKCHFAH  540
GERELGKPIL SSLDGPMAPS MGGRLGGRFE LPPPAGVDAA AASFGASATA KISVDASLAG  600
AIIGKGGVNT KQICRMTGAK LSIRDHESDP NLRNIELEGS FDQIKQASAM VRELIVNISS  660
STGIAARNPA PAASAGPGSN YKTKLCENFG KGACTFGDRC HFAHGASELR KSAA
Functional Description ? help Back to Top
Source Description
UniProtProbably involved in the regulation of chromatin states (Probable). Contributes to basal immunity (PubMed:21830950). {ECO:0000269|PubMed:21830950, ECO:0000305|PubMed:21830950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407885.10.0PREDICTED: protein EMSY-LIKE 3 isoform X1
SwissprotF4K2F01e-162EML3_ARATH; Protein EMSY-LIKE 3
TrEMBLM0TF800.0M0TF80_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P06400_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-49C3H family protein
Publications ? help Back to Top
  1. Coursey T,Milutinovic M,Regedanz E,Brkljacic J,Bisaro DM
    Arabidopsis Histone Reader EMSY-LIKE 1 Binds H3K36 and Suppresses Geminivirus Infection.
    J. Virol., 2018.
    [PMID:29875242]