PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P05980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 348aa    MW: 38988.7 Da    PI: 7.9774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P05980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.5e-5291381128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                            +ppGfrFhPt+eel+++yL+kkv+++++el +vi++vd++k+ePwd+++    + +a+++ewyfFs++d+ky+tg+r+nrat++g+Wk
  GSMUA_Achr7P05980_001   9 VPPGFRFHPTEEELLCYYLRKKVTSEEIEL-DVIRDVDLNKLEPWDIQEkcgvNGAAQQSEWYFFSHKDRKYPTGTRTNRATAAGFWK 95 
                            69****************************.9***************9535543334777**************************** PP

                    NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            atg+dk ++s + + +g++ktLvfykgrap+g+k dW+mheyrl
  GSMUA_Achr7P05980_001  96 ATGRDKVIYS-NARRIGMRKTLVFYKGRAPRGQKLDWIMHEYRL 138
                            **********.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-585174IPR003441NAC domain
PROSITE profilePS5100556.6689174IPR003441NAC domain
PfamPF023658.9E-2810138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSVNGRPRVP PGFRFHPTEE ELLCYYLRKK VTSEEIELDV IRDVDLNKLE PWDIQEKCGV  60
NGAAQQSEWY FFSHKDRKYP TGTRTNRATA AGFWKATGRD KVIYSNARRI GMRKTLVFYK  120
GRAPRGQKLD WIMHEYRLDD HSHLIPRSDM CAAVSMGEAT NQEDGWVVCR VFKQKNYHHH  180
KAIDDSKSSV KTQLLRPGGG DDALDQILQY MSRSYTRESQ GTSDNAADRA SNLRPIETVF  240
GCGLQEMFMK LPPLDSPTTL GSPPRNLPPD RSSDDHASHR SPAAIHAGVG DWAAFDQLLA  300
SQLGGPRHPS PSSATPHADD YRHGGDGDLW SLTAAASPLF DRISPVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47917617167NO APICAL MERISTEM PROTEIN
1ut4_B2e-47917617167NO APICAL MERISTEM PROTEIN
1ut7_A2e-47917617167NO APICAL MERISTEM PROTEIN
1ut7_B2e-47917617167NO APICAL MERISTEM PROTEIN
3swm_A3e-47917620170NAC domain-containing protein 19
3swm_B3e-47917620170NAC domain-containing protein 19
3swm_C3e-47917620170NAC domain-containing protein 19
3swm_D3e-47917620170NAC domain-containing protein 19
3swp_A3e-47917620170NAC domain-containing protein 19
3swp_B3e-47917620170NAC domain-containing protein 19
3swp_C3e-47917620170NAC domain-containing protein 19
3swp_D3e-47917620170NAC domain-containing protein 19
4dul_A2e-47917617167NAC domain-containing protein 19
4dul_B2e-47917617167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407945.10.0PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-104NAC43_ARATH; NAC domain-containing protein 43
TrEMBLM0TF380.0M0TF38_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P05980_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.12e-93NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]