PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P05730_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SRS | ||||||||
Protein Properties | Length: 312aa MW: 32940.4 Da PI: 7.1522 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 213.8 | 3.9e-66 | 87 | 243 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....kskkqsa 85 +sg++sCqdCGnqakkdCah RCRtCCksrgf+C thvkstWvpaakrrerqqql + +++ +++ e ++ + + ++++ GSMUA_Achr7P05730_001 87 GSGGVSCQDCGNQAKKDCAHLRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQLGGLVQHDHSHRGEGRAAGEVSGgsggGGDASKR 174 57899****************************************************9999988884444333333322333344444 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + ++ + +t++lP+evs+eavfrcvrvs vd++++e+aYqtavsigGhvf+GiLyd+G+++ GSMUA_Achr7P05730_001 175 PREIMAFAGLPTAMATTTTLPPEVSAEAVFRCVRVSPVDEADDEYAYQTAVSIGGHVFRGILYDHGADT 243 4445555566666777888***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.2E-65 | 90 | 242 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.2E-27 | 92 | 134 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.0E-24 | 194 | 240 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAEFLLGGGG GSQQHRGDQQ GVIPPSESFF LYGGRGSRSE DVAYTRGFEL WQQHQIQRGD 60 QLYSSAGLPD DLPSLAGRPM RGSPGGGSGG VSCQDCGNQA KKDCAHLRCR TCCKSRGFQC 120 PTHVKSTWVP AAKRRERQQQ LGGLVQHDHS HRGEGRAAGE VSGGSGGGGD ASKRPREIMA 180 FAGLPTAMAT TTTLPPEVSA EAVFRCVRVS PVDEADDEYA YQTAVSIGGH VFRGILYDHG 240 ADTEYPSPSS SRYQLNHGEG SSSPAAVAAA VITAGHPVIT TTAGATELLD PYATPLSAFM 300 AGTQFFPHQH RP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004329 | 5e-45 | AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12. | |||
GenBank | AP005463 | 5e-45 | AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01. | |||
GenBank | AP014962 | 5e-45 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009407973.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9LQZ5 | 5e-61 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | M0TF13 | 0.0 | M0TF13_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P05730_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-52 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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