PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr7P05680_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28175.7 Da PI: 5.7208 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 8e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ + G +W+++++ g+ R++k+c++rw +yl GSMUA_Achr7P05680_001 14 KGPWSAEEDNKLINFILANGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++eE+ l +d +++lG++ W++Ia++++ gRt++++k+ w+++ GSMUA_Achr7P05680_001 70 LSEEEERLVIDFHARLGNR-WSKIAAMLP-GRTDNEIKNLWNTH 111 599****************.*********.***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.692 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.577 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-13 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRRPCCDKL GVKKGPWSAE EDNKLINFIL ANGHCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEEEERLVID FHARLGNRWS KIAAMLPGRT DNEIKNLWNT HIKKKLLKMG 120 IDPVTHRPLH RQASPEASPS TVTTDKSDDQ LQSQGNEGQI PSSDNRSPAE ASSIDGGTDP 180 LMSCLWEDSA PVLLDELWQL SSDDDGNNYG SVIAGRMPWE EEGSSEWLLD IQDLENLDGE 240 RSISAQGYPR R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009407976.2 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
Refseq | XP_018684003.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q50EX6 | 5e-89 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | M0TF08 | 0.0 | M0TF08_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P05680_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G22680.1 | 2e-83 | myb domain protein 85 |
Publications ? help Back to Top | |||
---|---|---|---|
|