PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P04840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 304aa    MW: 35155.6 Da    PI: 9.2159
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P04840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.91.3e-2361139186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            +W++qe+++Li++r e+e++l  +++  +lWe+v+++mrerg +r++ qCk+kw+nl +ryk+    +++       +cp+f++l+
  GSMUA_Achr7P04840_001  61 QWSQQETRDLIAIRAELERDLAVARRSRTLWEAVAARMRERGHRRTSDQCKCKWKNLVNRYKAADPADGR-------QCPFFEELD 139
                            7*************************************************************99888876.......6*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002558120IPR001005SANT/Myb domain
CDDcd122038.18E-2160122No hitNo description
PfamPF138379.9E-2160140No hitNo description
Gene3DG3DSA:1.10.10.604.9E-561119IPR009057Homeodomain-like
PROSITE profilePS500908.07262118IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMHGGGGGGD GGYVGRMAMV AGIPLQVNPA PAAEMLDTSG GAGVPQPPQP RLRVKEEKVP  60
QWSQQETRDL IAIRAELERD LAVARRSRTL WEAVAARMRE RGHRRTSDQC KCKWKNLVNR  120
YKAADPADGR QCPFFEELDA VFLERAKNTQ RLLLESESIA SPSKKKLKRL SGDRSSSDEF  180
PEDDEDENGS DEERLSRSRK KKADSSRGGQ RAAGIRELLQ EFLQQQRRME LRWQDTVERR  240
AQERRALEHE WRLSMEKLER DRLLLEQAWR EREEQRRMRE ENRAEKRDAL LTTLLNKLIQ  300
DDDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684066.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLM0TES40.0M0TES4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.17e-25Trihelix family protein