PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P04710_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LSD | ||||||||
Protein Properties | Length: 141aa MW: 14673.2 Da PI: 8.0709 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.6 | 1.7e-12 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C +V GSMUA_Achr7P04710_001 27 CSGCRNLLLYPQGAKSVCCAVCRAV 51 ***********************98 PP | |||||||
2 | zf-LSD1 | 45.6 | 1.1e-14 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV GSMUA_Achr7P04710_001 66 CGGCHTLLMYIRGASSVQCSCCHTV 90 ************************9 PP | |||||||
3 | zf-LSD1 | 40.9 | 3.3e-13 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C++V GSMUA_Achr7P04710_001 104 CGNCQMLLMYQYGARSVKCAVCNFV 128 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.6E-13 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 6.98E-5 | 27 | 125 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 9.8E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.2E-15 | 63 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-12 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-10 | 101 | 130 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.5E-12 | 104 | 128 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MPVPLAPYPT PPAPLAPPNG GQSQLVCSGC RNLLLYPQGA KSVCCAVCRA VTTVPPPGTE 60 MAQLICGGCH TLLMYIRGAS SVQCSCCHTV NLALEANQVA HVNCGNCQML LMYQYGARSV 120 KCAVCNFVTS IGASPSTEQK A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408105.1 | 3e-97 | PREDICTED: protein LSD1 isoform X4 | ||||
Swissprot | Q0J7V9 | 1e-78 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | M0TER1 | 8e-96 | M0TER1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P04710_001 | 1e-96 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-66 | lsd one like 1 |
Publications ? help Back to Top | |||
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