PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P04620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 267aa    MW: 29513.5 Da    PI: 8.1461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P04620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.3e-132973147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r +WT+++++++++a +++  + Wk+I + +g  +t  q++s+ qky
  GSMUA_Achr7P04620_001 29 RESWTEQDHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 73
                           789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.53E-162379IPR009057Homeodomain-like
PROSITE profilePS5129414.4882478IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-62779IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-182776IPR006447Myb domain, plants
SMARTSM007173.0E-102876IPR001005SANT/Myb domain
PfamPF002491.4E-102973IPR001005SANT/Myb domain
CDDcd001676.36E-83174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MALPGCAAAP SSEDVGKKTR KPYTITKSRE SWTEQDHDKF LEALQLFDRD WKKIEAFVGS  60
KTVIQIRSHA QKYFLKVQKN GTNEHVPPPR PKRKAAHPYP QKAAKNVTQI PEVKTLLQTS  120
CLLEPGYAST GETSSILRDS TTITGSSWVQ SSVQPVGTCH PIKDDKVNVG VMMANNCCSS  180
SSGSPTTWPA CETTDQENQF TSLHVTPDFA QVYGFLGSVF DPNTSGHLQK LKAMDPINIE  240
TVLILMRNLH LNLTSPEFEA HVSLLVF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408116.10.0PREDICTED: protein REVEILLE 6-like isoform X2
SwissprotQ8H0W35e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLM0TEQ20.0M0TEQ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-83MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]