PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P03800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 142aa    MW: 16235.2 Da    PI: 11.4298
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P03800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.8e-193466133
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                           C+ C++tkTplWR gp g+k+LCnaCG++yrk+
  GSMUA_Achr7P03800_001 34 CTDCRATKTPLWRAGPTGPKSLCNACGIRYRKN 66
                           *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-162881IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-142877No hitNo description
PROSITE profilePS5011413.1122889IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.5E-172978IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.14E-123389No hitNo description
PfamPF003207.5E-173466IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MRLFAVVCCF LLRFHLQASC DANPRSSDSQ IKSCTDCRAT KTPLWRAGPT GPKSLCNACG  60
IRYRKNVKEA GMKVKKEKRE IGDGGGRKRF GVYLKMQMSG LGLWKQISMI RKRRRWRRRR  120
REVLGEEEQA AVLLMALSSG LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRRR
2110120RKRRRWRRRRR
3113120RRWRRRRR
4113121RRWRRRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408225.16e-86PREDICTED: GATA transcription factor 16-like
TrEMBLM0TEH01e-98M0TEH0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P03800_0012e-99(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-30GATA transcription factor 16