PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P02960_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26635.9 Da PI: 7.3244 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.8 | 7.6e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr +lKKA+ELSvLCdae+ +iifs++gklye + GSMUA_Achr7P02960_001 9 KRIENPVHRQVTFCKRRMSLLKKANELSVLCDAEIGIIIFSTHGKLYELA 58 79*********************************************965 PP | |||||||
2 | K-box | 58.2 | 3.6e-20 | 98 | 183 | 15 | 99 |
K-box 15 eslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +qe++ Lkkei+ L +++R +lGe++ + ++l eL Le++Le + +iR++K+++++++i+ l++ke l+ +n L++k+ GSMUA_Achr7P02960_001 98 HEFKQEISMLKKEIDLLHKSLRCMLGEGIaGHMTLDELLVLEKHLEMWMYHIRATKMQIMFQEIQSLKNKEGILKAANVFLQEKIL 183 5679*************************447***************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.03 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-26 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.67E-38 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 1.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.778 | 97 | 188 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.6E-23 | 98 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MARGKVQLKR IENPVHRQVT FCKRRMSLLK KANELSVLCD AEIGIIIFST HGKLYELATK 60 GTMEGLIDRY KTACGDAHST AGGGDANQSQ VILPPSLHEF KQEISMLKKE IDLLHKSLRC 120 MLGEGIAGHM TLDELLVLEK HLEMWMYHIR ATKMQIMFQE IQSLKNKEGI LKAANVFLQE 180 KILEQNSLFD VSPMLVQQNG HFDAGQMVAA DSPYPLTVQY EHSNLGGSDM GFSYLSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-15 | 1 | 85 | 1 | 83 | MEF2C |
5f28_B | 1e-15 | 1 | 85 | 1 | 83 | MEF2C |
5f28_C | 1e-15 | 1 | 85 | 1 | 83 | MEF2C |
5f28_D | 1e-15 | 1 | 85 | 1 | 83 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408325.1 | 1e-168 | PREDICTED: MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 7e-87 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 7e-87 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | M0TE86 | 1e-176 | M0TE86_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P02960_001 | 1e-177 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-67 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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