PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P02510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 561aa    MW: 62020.5 Da    PI: 6.6563
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P02510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-162774148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT  Ede+lv++v ++G g+W+++ ++  ++R++k+c++rw ++l
  GSMUA_Achr7P02510_001 27 KGPWTSAEDEILVNYVDRFGEGNWNAVQKHTKLRRCGKSCRLRWINHL 74
                           79*******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5932278IPR017930Myb domain
SMARTSM007172.9E-132676IPR001005SANT/Myb domain
SuperFamilySSF466891.41E-2328104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-232881IPR009057Homeodomain-like
CDDcd001673.86E-102974No hitNo description
PfamPF139215.4E-153090No hitNo description
PROSITE profilePS500907.54975159IPR017877Myb-like domain
SMARTSM007172.1E-879161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2082107IPR009057Homeodomain-like
CDDcd001678.23E-682159No hitNo description
Gene3DG3DSA:1.10.10.608.2E-20142161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MEQINSQPSE EDSCGESTNK GNEDLKKGPW TSAEDEILVN YVDRFGEGNW NAVQKHTKLR  60
RCGKSCRLRW INHLRPNLKK GAFTEDEEQL IIALHSKMGN RWAQMAAFRP LKFQYIFFLF  120
FFNLVDTVRY RYSFHLHLKL SPLPGRTDNE IKNYWNTRKK RCQRAGLPLY PPNACHNVSE  180
ENVQCSRLSK YSYSYDQPLE LLQGSFPDSP DIISDNFQTS YGASSYAMPF ADAAGFGSQN  240
YSFANPTANC VEQSTDSEKF LLALHGSVAD VYPTTKQFLF QPSGSTPRNC FGSLHGADPS  300
SQSLAPLLGA IPGSYALLND TFSTYCPTRG TAKLELPSDQ CVETDASSRL SCPATPVSLY  360
STAVADSYME SPSALVSLQS KCFPPWKSSP VLQEAHVLSS AEKEPPLKSS SVTPIVKSSD  420
VSECSINGTE LYSSPVAFDR YVKSPSATIP FQSSCVTPWK NVPLRSVLQE GHAPGNSEAK  480
SSEKRSVTSI MKPNNVICSS GLSINDREFN SKPVVADTYV GSPPATFSLQ SKYLTSWKSD  540
PVLVEADAFD SAEEEPSKKF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27211611106B-MYB
1h8a_C5e-272216122126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408386.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_018684074.10.0PREDICTED: transcription factor GAMYB-like isoform X2
RefseqXP_018684075.10.0PREDICTED: transcription factor GAMYB-like isoform X2
RefseqXP_018684076.10.0PREDICTED: transcription factor GAMYB-like isoform X2
TrEMBLM0TE410.0M0TE41_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P02510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.17e-61myb domain protein 65