PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P01090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 296aa    MW: 32349.9 Da    PI: 10.0503
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P01090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.46e-12555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           ++rWT+eE+  l+ +v+++G g W+tI +          R+  ++k++w++
  GSMUA_Achr7P01090_001  5 KQRWTPEEEAALKAGVRKHGVGKWRTILKDPEfsgvlSMRSNVDLKDKWRN 55
                           79***********************************99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.395161IPR017930Myb domain
SuperFamilySSF466897.9E-16259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-14456IPR009057Homeodomain-like
SMARTSM007171.9E-7459IPR001005SANT/Myb domain
PfamPF002491.8E-8555IPR001005SANT/Myb domain
CDDcd116602.06E-19657No hitNo description
SuperFamilySSF467857.62E-15119197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005268.9E-16119184IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.678121189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.5E-14125195IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.2E-9127182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGAPKQRWTP EEEAALKAGV RKHGVGKWRT ILKDPEFSGV LSMRSNVDLK DKWRNINVTA  60
YGWGSRGKAR AALKKSRQIS RHDGALVSVG TTVEDTDTEI IDAKPLTMSS EPHQTTGQKR  120
SLFRLDTLIL EAVTNLKEPA GSDKAAIAMY IEDRYWPPTD FKQLLSAKLK ALTSSGRLIK  180
VKRKYSTPSS SAFSEEKSSK LLLLEGRQRE SRVDIKPLLK SQVDAELART QSMTAQEAAA  240
LAAKAVAEAE AAIAEAEEAA REAEAAEADA EAAQAFAEAA MLTLRNKNAT KLMIQV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408548.10.0PREDICTED: single myb histone 6 isoform X2
SwissprotC0HIA31e-88SMH6_MAIZE; Single myb histone 6
TrEMBLM0TDP90.0M0TDP9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P01090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-63telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]