PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P00950_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LSD | ||||||||
Protein Properties | Length: 179aa MW: 18780 Da PI: 8.4442 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.8 | 1.5e-12 | 12 | 36 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA sV+Ca+C t+ GSMUA_Achr7P00950_001 12 CSGCRNVLLYPRGAASVCCAICSTI 36 **********************997 PP | |||||||
2 | zf-LSD1 | 36.4 | 8.8e-12 | 51 | 75 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ GA+ VRC++C+t+ GSMUA_Achr7P00950_001 51 CGGCRTLLMHVHGATTVRCSCCNTI 75 ***********************97 PP | |||||||
3 | zf-LSD1 | 47 | 4.1e-15 | 89 | 113 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+ V GSMUA_Achr7P00950_001 89 CGHCHTTLMYPYGAPSVKCAICHYV 113 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.2E-12 | 9 | 39 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-10 | 12 | 36 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-13 | 48 | 77 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-10 | 51 | 75 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.8E-10 | 87 | 116 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.5E-14 | 89 | 113 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MISSGMQGQL VCSGCRNVLL YPRGAASVCC AICSTITTVP PPGMEMAQLI CGGCRTLLMH 60 VHGATTVRCS CCNTINITRP VNQVANVRCG HCHTTLMYPY GAPSVKCAIC HYVTNVGQMD 120 GMRLPVSTMH RLNGPTPAPP SASASQVQNT TVVVENPMSV DESGKLVSNL VVGVTTGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408561.1 | 1e-126 | PREDICTED: protein LOL3-like isoform X1 | ||||
Swissprot | Q6ASS2 | 7e-75 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | M0TDN5 | 1e-125 | M0TDN5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P00950_001 | 1e-126 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 6e-61 | LSD family protein |
Publications ? help Back to Top | |||
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