PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P00610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 482aa    MW: 52842.5 Da    PI: 9.0778
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P00610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32192248259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgynWrKYGqK+vkg e+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  GSMUA_Achr7P00610_001 192 DDGYNWRKYGQKQVKGGEYPRSYYKCTHQKCPVKKKVERSF-DGQVTEIVYKGQHNHQ 248
                            8****************************************.***************8 PP
2WRKY106.11.8e-33364422159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++dpk+v++tYeg+Hnh+
  GSMUA_Achr7P00610_001 364 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNSGCNVRKHVERASTDPKAVITTYEGKHNHD 422
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-29183250IPR003657WRKY domain
SuperFamilySSF1182904.84E-26189250IPR003657WRKY domain
SMARTSM007741.1E-35191249IPR003657WRKY domain
PROSITE profilePS5081123.893192250IPR003657WRKY domain
PfamPF031067.8E-25192248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-37349424IPR003657WRKY domain
SuperFamilySSF1182901.7E-29356424IPR003657WRKY domain
PROSITE profilePS5081138.756359424IPR003657WRKY domain
SMARTSM007742.8E-39364423IPR003657WRKY domain
PfamPF031061.8E-26365422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAEPQGGAQR PPPRPAIALP SRSSMESLFR PADVSPGLSS LLADPDLEYP SFSQLLAGAI  60
GPLALGQSRP VNLTATRLPL ITFPSGISPS SLFQSPPSLF SPAQGQYGIL NQQNQPQATV  120
QAARSHAYDP TSYSSTLSAA PATTAVASLR HLPTPFNLSS AQQMPQYNST SESAHGDRRS  180
QPSTLVVDKP ADDGYNWRKY GQKQVKGGEY PRSYYKCTHQ KCPVKKKVER SFDGQVTEIV  240
YKGQHNHQPP QQNRHAKEGG SLASGSNGSK PEPASQGLYE SFGKSSETTY KRNLESDHDS  300
SKYISDSSDD EEAGEIAMRT DELDENQPDL KRRKMDIRNN QSASYCTVTE PKVIFQTTSE  360
VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TNSGCNVRKH VERASTDPKA VITTYEGKHN  420
HDVPAARSSN HSMLNANASA SIISPNTLHN YSRNQISLGS TDLGHNIERP VAIQLKKERD  480
GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-40192425878Probable WRKY transcription factor 4
2lex_A1e-40192425878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408606.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-121WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLM0TDK10.0M0TDK1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P00610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-96WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]