PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P00280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 326aa    MW: 36467.4 Da    PI: 7.6679
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P00280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-102361448
                           HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           + v+++G g+W+++ r+ g+ R++k+c++rw ++l
  GSMUA_Achr7P00280_001  2 EHVRRHGEGNWNSVQRHSGLARCGKSCRLRWANHL 36
                           579****************************9986 PP
2Myb_DNA-binding52.61e-164285146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           +g++++eE++l+++++ qlG++ W++ a++++ gRt++++k++w++
  GSMUA_Achr7P00280_001 42 KGSFSPEEELLILRLHSQLGNK-WARMAAHLP-GRTDNEIKNYWNT 85
                           799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.989136IPR017930Myb domain
SMARTSM0071710238IPR001005SANT/Myb domain
SuperFamilySSF466893.01E-22283IPR009057Homeodomain-like
PfamPF002496.7E-8236IPR001005SANT/Myb domain
CDDcd001671.26E-5236No hitNo description
Gene3DG3DSA:1.10.10.601.0E-15243IPR009057Homeodomain-like
PROSITE profilePS5129425.4493791IPR017930Myb domain
SMARTSM007171.5E-164189IPR001005SANT/Myb domain
PfamPF002491.4E-154285IPR001005SANT/Myb domain
CDDcd001674.07E-124487No hitNo description
Gene3DG3DSA:1.10.10.601.4E-254490IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEHVRRHGEG NWNSVQRHSG LARCGKSCRL RWANHLRPNL KKGSFSPEEE LLILRLHSQL  60
GNKWARMAAH LPGRTDNEIK NYWNTRLKRR QRAGLPIYPP ELQDGVGFDH YQLKHEAPTS  120
LWTPPPLPSP SFAAEHKAQL PSLWPVPLLN HDSFRPPSGI TLSPLRRNEF AGHLGFKFPP  180
SPPPNPTSLF PKQQLRLGHS QATPPQLLSP LPWPPQGKME LPSCQLFPDL VGGGDDPTGR  240
ELLEALLQDE RVTQDINIGE LLALPTIDEQ GALWEQIFGD GEGQVVEETS QGYFLGSATK  300
LEGLHCDMGE FHRSNLPVSV ACGCRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2319039127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408803.10.0PREDICTED: uncharacterized protein LOC103991170
TrEMBLM0TDG80.0M0TDG8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P00280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.18e-58myb domain protein 101