PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P36930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 311aa    MW: 35254.7 Da    PI: 5.5835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P36930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l+++++ +G  +W+ ++ + g+ R++k+c++rw +yl
  GSMUA_Achr6P36930_001 14 RGLWSPEEDEKLIRYITAHGYCCWSEVPMKAGLQRCGKSCRLRWINYL 61
                           788*******************************************97 PP
2Myb_DNA-binding50.74.2e-1667111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rgr T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  GSMUA_Achr6P36930_001  67 RGRITPEEEKLIISLHGIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                            89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4961IPR017930Myb domain
SuperFamilySSF466892.85E-2812108IPR009057Homeodomain-like
SMARTSM007178.7E-111363IPR001005SANT/Myb domain
PfamPF002498.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-231568IPR009057Homeodomain-like
CDDcd001672.50E-101761No hitNo description
PROSITE profilePS5129424.48362116IPR017930Myb domain
SMARTSM007175.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2469116IPR009057Homeodomain-like
CDDcd001671.27E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGHHSCCNQQ KVRRGLWSPE EDEKLIRYIT AHGYCCWSEV PMKAGLQRCG KSCRLRWINY  60
LRPGIRRGRI TPEEEKLIIS LHGIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPT  120
TPQPTASPRV ELVHPSLNSM NQLDSTDLHR DLTSKSSPDP IFPSPWPLFM FDDGGVSGRH  180
SASSCTREEP LQEATCSDMY NVPNHKQDEA DMPSLFDLVN SSMTYNNLPP LVDDMENTVT  240
EEEAQPCCLG DNGEVSGESF EKKGLGEWLV PQQYSCLLSW DDVQSPIGDE TIITTSSSMA  300
TMDTTFPFPW Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407140.10.0PREDICTED: transcription factor MYB86-like
TrEMBLM0TDD30.0M0TDD3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P36930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-81myb domain protein 103