PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P36840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 369aa    MW: 42678.1 Da    PI: 6.7289
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P36840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.4e-5581371129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPtdeelv +yL+kkv+++k++l +vik+vd+yk+ePwdL++  k+ a e++ew+fFs++dkky+tg+r+nrat++g+Wka
  GSMUA_Achr6P36840_001   8 VPPGFRFHPTDEELVGYYLRKKVAARKIDL-DVIKDVDLYKIEPWDLEEicKIGAeEQTEWHFFSHKDKKYPTGTRTNRATAAGFWKA 94 
                            69****************************.9***************954555552455***************************** PP

                    NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            tg+dk+++s  ++l+g++ktLv+ykgrap+g+k+dW+mheyrle
  GSMUA_Achr6P36840_001  95 TGRDKPIYS-VRRLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 137
                            *********.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-556146IPR003441NAC domain
PROSITE profilePS5100555.6788192IPR003441NAC domain
PfamPF023651.5E-279136IPR003441NAC domain
SuperFamilySSF1019411.96E-55180192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNDDISCVPP GFRFHPTDEE LVGYYLRKKV AARKIDLDVI KDVDLYKIEP WDLEEICKIG  60
AEEQTEWHFF SHKDKKYPTG TRTNRATAAG FWKATGRDKP IYSVRRLIGM RKTLVYYKGR  120
APNGQKSDWI MHEYRLETNE DGTPQASISF LCFAISHGKD FKFQHTLPHD HIISSDFISQ  180
EEGWVVCRAF KKRVPTARKA SDELLPWYDE QASFMQDIYS PKRTIPQADI GYHHQLYPHK  240
RDIKLHHHSP HEACHQLPPL ESPKFLNYLN HESSLQRCII SENEALQPGH RFGEITTCND  300
NENTSRASDQ MTDWRVLDKF VASQLSHDVS REPIYSDEAN ILQAPVEQQV VGVELPLASA  360
SSCQIDPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-47813615140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407150.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_018682818.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_018682819.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-110NAC7_ARATH; NAC domain-containing protein 7
TrEMBLM0TDC40.0M0TDC4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P36840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-103NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]