PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P36550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 278aa    MW: 31666 Da    PI: 5.5088
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P36550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.4e-49101401129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrF P+deelv++yL kkv++++++   ++ evd+++ ePw+Lp+ +k +++ewyfFs rd+kyatg r nrat+sgyWkatgk
  GSMUA_Achr6P36550_001  10 LPPGFRFCPSDEELVCYYLFKKVANESVSGGGTMVEVDLHTREPWELPEVAKLSRDEWYFFSFRDRKYATGLRMNRATRSGYWKATGK 97 
                            79**************************99899***************87788889******************************** PP

                    NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            d++v++   ++ ++g++ktLvfy+grap+g+k+dWvmhe+rle
  GSMUA_Achr6P36550_001  98 DRSVYAPttRTFVMGMRKTLVFYSGRAPNGVKSDWVMHEFRLE 140
                            ******95455569**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-587158IPR003441NAC domain
PROSITE profilePS5100556.93810158IPR003441NAC domain
PfamPF023656.8E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDLRDIESTL PPGFRFCPSD EELVCYYLFK KVANESVSGG GTMVEVDLHT REPWELPEVA  60
KLSRDEWYFF SFRDRKYATG LRMNRATRSG YWKATGKDRS VYAPTTRTFV MGMRKTLVFY  120
SGRAPNGVKS DWVMHEFRLE APHTPPKEDW VLCRVFRKKK KSPVVYSMET EESSPPLPLP  180
ESGVAEEWQE QMMTTQERQE DNGSNTVLNW AVLRGSLVDF PRELGSGRTM VMGVGSRCGG  240
DDYEMLLDMS LQDLDAMGGG IASVGCLRFQ GSRDQLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-46516110171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407183.10.0PREDICTED: NAC domain-containing protein 21/22-like
TrEMBLM0TD970.0M0TD97_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P36550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-77NAC domain containing protein 74