PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P36210_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 275aa    MW: 30555.2 Da    PI: 9.187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P36210_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-10105153355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  GSMUA_Achr6P36210_001 105 NSHSLAERVRREKISQRMKLLQELVPGC----SKVTGKALMLDEIINYVQSLQ 153
                            58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-17100171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16105172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-7105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-9106157No hitNo description
SMARTSM003534.9E-10108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTERKKGRWL DVERGQAEFS GGGHEHGASS TSGAENSSSK NLGANKRRSI EVDDASMDQT  60
HGVPQISTET KNRQKSSTVK PHGKQSKDFS EDYIHLRARH GQATNSHSLA ERVRREKISQ  120
RMKLLQELVP GCSKVTGKAL MLDEIINYVQ SLQQQVEFLS MKLATVNPRL DMNIEALLSK  180
DLLRSHGGSS SAVGFSPHVV DPQLHLSQQG LMQTGIFGDL NTANSFRRTI DSQLSLYKGR  240
TTQMPVSCDE ELQNVMQMAT LCSNHFNNRE FGDKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407236.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_018682820.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_018682821.10.0PREDICTED: transcription factor bHLH49-like
SwissprotQ9CAA91e-57BH049_ARATH; Transcription factor bHLH49
TrEMBLM0TD640.0M0TD64_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P36210_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]