PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P36080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family FAR1
Protein Properties Length: 511aa    MW: 58090.8 Da    PI: 8.0071
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P36080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.21.9e-122662135
                   GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C+nCg +   T ++R+gp+g +tLCnaCG+ +rk ++
  GSMUA_Achr6P36080_001 26 CHNCGISAklTCHMRSGPEGRRTLCNACGIAWRKGKQ 62
                           *****9999*************************987 PP
2FAR182.19.6e-2696181188
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn+YA ++GFsvrk    ks  ++ + +rt+vCs+eg+r+++k + ++ +++r+etr+gC a+l++k++ +g+++vt+++ +HnH+
  GSMUA_Achr6P36080_001  96 EFYNRYAGMIGFSVRKGWIDKS-SDKITRSRTLVCSREGFRKDKKGA-KEVKKPRPETRIGCPARLTIKLRPSGTYRVTEFVPDHNHQ 181
                            6*******************99.777799**************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-72082IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-92376No hitNo description
Gene3DG3DSA:3.30.50.107.6E-102463IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.56E-72563No hitNo description
PfamPF003209.8E-112662IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402653IPR000679Zinc finger, GATA-type
PfamPF031014.3E-2396181IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.274372408IPR007527Zinc finger, SWIM-type
SMARTSM005750.0045383410IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MPIEQDKDQE VQAGNGEDLV EGPVRCHNCG ISAKLTCHMR SGPEGRRTLC NACGIAWRKG  60
KQRKVIDYEV PMKDLVNTKM VPEVDMEFEN EDKAYEFYNR YAGMIGFSVR KGWIDKSSDK  120
ITRSRTLVCS REGFRKDKKG AKEVKKPRPE TRIGCPARLT IKLRPSGTYR VTEFVPDHNH  180
QPAPPSAMHM LRSQRVLTEV QAAEADLSDD SGTTPKSANQ QTGRQTMLEK YDLRNNEWLA  240
NLFGDRENWA LAYGRETLCA DMKSTLQNEN FSLLKKYLTP QLDLLSFFKH YMRVVDDHRY  300
AELQADFHAS QSVPRIPPSK MLRQAASLYT PAVFQMFHKE FEVFMDCMLF SSGEVGTISE  360
YRITVGDNPK EYFVRLDSTD CSVACSCKKF EFVGVHCGHV LKVLDVRNIK ELPERYFLKR  420
WRRDAKTDTE SDPGGVTLDG DPKSPVTTLM HAPFSSYVHH LGSRAITQFS EESPASDSHQ  480
QLLHGAAQLS QGYTTPNLHS QPIFTNSQLN H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407252.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_018682502.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLM0TD510.0M0TD51_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P36080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-34FAR1-related sequence 5