PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P36010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 438aa    MW: 48339 Da    PI: 8.5367
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P36010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1308.4e-41177253278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC+ dls+ k+yhr+hkvCe hsk+p+v+v+g+ +rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q 
  GSMUA_Achr6P36010_001 177 CQVEGCNIDLSTSKDYHRKHKVCESHSKSPKVVVAGQDRRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQL 253
                            **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-33174238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.052174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-38175256IPR004333Transcription factor, SBP-box
PfamPF031106.4E-32177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDWTSKMPFS FDWETLALLN GEETEISKSA QELKSKIGSG IGMGTGSLQF SGGDMCSSSK  60
VGSCSFKSSI SASDSTSNAM RKIPELNFES VGGFLVNQNK NKDLARVDIS ETSPAVVSAE  120
GTKEPVITLK LGKRTYFEDP CLRNNMKSSY FPASNPLSTT SVKKSRVYQQ NLLRAYCQVE  180
GCNIDLSTSK DYHRKHKVCE SHSKSPKVVV AGQDRRFCQQ CSRFHDLSEF DQKKRSCRRR  240
LSDHNARRRK PQLETISFSS SKLSVSYYDD KQQANLVFGQ SPFRQMTSIA SSIWDGSGSL  300
KLTQSEGSWR KSSETGSTNG QLLFPSNTNL NNAYTGHDMD SLLALNGTTA EILNQGLEAT  360
ATFQSDGAPD LWRALSLLST NKSCSPPITG YANDARPEQP LLQVLPFESR SDSGHQLQES  420
LLFKPFFGTV FVDTSHLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407263.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009407264.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_018683386.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
TrEMBLM0TD440.0M0TD44_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P36010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-52squamosa promoter binding protein-like 2