PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P35800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 299aa    MW: 33620 Da    PI: 7.4526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P35800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l++++  +G g+W++++r  g+ R++k+c++rw +yl
  GSMUA_Achr6P35800_001 14 RGLWSPEEDEKLIKYISTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61
                           788*******************************************97 PP
2Myb_DNA-binding53.65.1e-1767110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++T++E+ l+++++++lG++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr6P35800_001  67 RGSFTPQEESLIIELHRMLGNR-WSQIAKQLP-GRTDNEVKNFWNS 110
                            89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.782961IPR017930Myb domain
SuperFamilySSF466893.56E-3012108IPR009057Homeodomain-like
SMARTSM007178.3E-141363IPR001005SANT/Myb domain
PfamPF002494.8E-161461IPR001005SANT/Myb domain
CDDcd001671.51E-121761No hitNo description
PROSITE profilePS5129426.55162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2665117IPR009057Homeodomain-like
SMARTSM007171.4E-1666114IPR001005SANT/Myb domain
PfamPF002497.7E-1667110IPR001005SANT/Myb domain
CDDcd001673.79E-1269109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGHHSCCNKQ KVRRGLWSPE EDEKLIKYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF TPQEESLIIE LHRMLGNRWS QIAKQLPGRT DNEVKNFWNS TIKKKLVSQA  120
MDNLNPMPCA DELLPLSTYR NQLFCGPEQY YFLNGINLPV GYDSPDLPGF VADGVTSSST  180
WSLDPRHQNQ LQHNNNNGNN LLVFNEELTL PLHYTEAIKH ATTSFAVNCN QSLETQDSII  240
QCFAAPNECP NARPLSNNPQ GSMNTVRFKD AIMASSSAPA VVLGDSLADI SGVQTHWIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407596.10.0PREDICTED: transcription factor MYB26-like
TrEMBLM0TD230.0M0TD23_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P35800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128133035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-76myb domain protein 26