PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P35320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 143aa    MW: 16182.1 Da    PI: 8.2055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P35320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-162265249
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                            y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  
  GSMUA_Achr6P35320_001 22 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAALAYDLS 65
                           588******.**********865...5******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-182180IPR016177DNA-binding domain
SMARTSM003805.0E-272286IPR001471AP2/ERF domain
PROSITE profilePS5103220.1782280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-262280IPR001471AP2/ERF domain
PfamPF008475.5E-102364IPR001471AP2/ERF domain
CDDcd000185.98E-262381No hitNo description
PRINTSPR003674.1E-92334IPR001471AP2/ERF domain
PRINTSPR003674.1E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEDFPQAILH RSRRRRTRAS SEYLGVRRRP WGRYAAEIRN PYTKERHWLG TFDTAEEAAL  60
AYDLSSISFC GPARARTNFR YPFLPAPSPP PPPPPPPPSP LSEETNVCYF EVDSTGDDDS  120
MTIAVILQSF RQSTSLSSSS LLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1521791371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407604.11e-100PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ3E7036e-27ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLM0TCX58e-99M0TCX5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P35320_0011e-99(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.11e-27ERF family protein