PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P34090_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 612aa MW: 68924 Da PI: 6.1871

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P34090_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	90.4	3e-28	276	381	2	110
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 +lL++cA+av+++d++ a++lL+++++++sp gd++qRla+ f+ +L+arla+++s++y++l++++ + ++++l+a++l+ ++P GSMUA_Achr6P34090_001 276 SSLLTHCAHAVAADDHRSANELLKQIRQHSSPFGDANQRLAHWFADGLQARLAGTGSQIYHSLTAKRIP---VTDVLKAYQLYMAACP 360 689*************************************************************999...************ PP GRAS 90 ilkfshltaNqaIleavegee 110 + k+sh+ a q+Il+ +e+++ GSMUA_Achr6P34090_001 361 FRKVSHFFATQTILNVAEKAT 381 *************999875 PP
2	GRAS	207.2	9.5e-64	388	607	155	374
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 +e + etg+rLa++A+++++pfef+ +va +++d+++e+L+++ +E+++Vn+ ++ ++llde+v ++++rd+vL+++++++P+v+++ GSMUA_Achr6P34090_001 388 TELIDETGRRLADYASNFRIPFEFRSIVAAKWDDIRVEDLDLRDDEVVVVNCLYRFKNLLDETVVVDNPRDKVLNTIRKINPDVFIHG 475 567899******************************************************************************** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330 + ++++ F++rf eal +ys+lfd++ +++p+e+e r+ +E++l+gre+ nv+aceg+er er et+++W+ r +aGF ++pl+ GSMUA_Achr6P34090_001 476 VVNGTYSAPFFVTRFREALFHYSSLFDMIGTNAPQEDESRQLIEKVLFGREALNVLACEGTERLERPETYKQWHVRNLRAGFVQLPLN 563 ************************************************************************************ PP GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++k++ ++ ++ + + v+e++ +l++gWk+r ++++S W+ GSMUA_Achr6P34090_001 564 RDIVKNVTDKMKSCYHKDFVVDEDKRWLLQGWKGRIVYALSTWK 607 ***********888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	35.349	249	587	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-25	276	381	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-61	388	607	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MDDLFTEEDA LNSLDLGGQQ QSSNHRSSRL DLPDDHPGLP PSVCTPNANV SPVTETGTLD 60 DSEIFSDIGL NYISQMLMEE NTDDKFDVYL ENPALFDPEN TFLEILRENL TASPGQPPLC 120 SSHFSDSPDG DHHGSSGSST VMDNSHSTLV APDLPADSQP AWQFQGGIEE AHKFLPSNDN 180 EHAVHPSRGR KNRHGEDLEL EEGRSIKQSA VFSGETGRTK LFDEVFLCSG GSCAKAVDKF 240 RERSQNEASK VSHGSRSKGR KGRGKKQPKR EVVDLSSLLT HCAHAVAADD HRSANELLKQ 300 IRQHSSPFGD ANQRLAHWFA DGLQARLAGT GSQIYHSLTA KRIPVTDVLK AYQLYMAACP 360 FRKVSHFFAT QTILNVAEKA TRHGFRPTEL IDETGRRLAD YASNFRIPFE FRSIVAAKWD 420 DIRVEDLDLR DDEVVVVNCL YRFKNLLDET VVVDNPRDKV LNTIRKINPD VFIHGVVNGT 480 YSAPFFVTRF REALFHYSSL FDMIGTNAPQ EDESRQLIEK VLFGREALNV LACEGTERLE 540 RPETYKQWHV RNLRAGFVQL PLNRDIVKNV TDKMKSCYHK DFVVDEDKRW LLQGWKGRIV 600 YALSTWKSNS SY

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MDDLFTEEDA LNSLDLGGQQ QSSNHRSSRL DLPDDHPGLP PSVCTPNANV SPVTETGTLD  60
DSEIFSDIGL NYISQMLMEE NTDDKFDVYL ENPALFDPEN TFLEILRENL TASPGQPPLC  120
SSHFSDSPDG DHHGSSGSST VMDNSHSTLV APDLPADSQP AWQFQGGIEE AHKFLPSNDN  180
EHAVHPSRGR KNRHGEDLEL EEGRSIKQSA VFSGETGRTK LFDEVFLCSG GSCAKAVDKF  240
RERSQNEASK VSHGSRSKGR KGRGKKQPKR EVVDLSSLLT HCAHAVAADD HRSANELLKQ  300
IRQHSSPFGD ANQRLAHWFA DGLQARLAGT GSQIYHSLTA KRIPVTDVLK AYQLYMAACP  360
FRKVSHFFAT QTILNVAEKA TRHGFRPTEL IDETGRRLAD YASNFRIPFE FRSIVAAKWD  420
DIRVEDLDLR DDEVVVVNCL YRFKNLLDET VVVDNPRDKV LNTIRKINPD VFIHGVVNGT  480
YSAPFFVTRF REALFHYSSL FDMIGTNAPQ EDESRQLIEK VLFGREALNV LACEGTERLE  540
RPETYKQWHV RNLRAGFVQL PLNRDIVKNV TDKMKSCYHK DFVVDEDKRW LLQGWKGRIV  600
YALSTWKSNS SY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-36	281	610	25	382	Protein SCARECROW
5b3h_A	4e-36	281	610	24	381	Protein SCARECROW
5b3h_D	4e-36	281	610	24	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407498.2	0.0	PREDICTED: scarecrow-like protein 9 isoform X1
Swissprot	O80933	1e-159	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	M0TCK2	0.0	M0TCK2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P34090_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-144	GRAS family protein