PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P33700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 442aa    MW: 48978.6 Da    PI: 6.5642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P33700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-18120166148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g WT+eEd  lv++vkq+G + W+ Ia+ +  gR +kqc++rw+++l
  GSMUA_Achr6P33700_001 120 KGQWTAEEDSMLVRLVKQHGVRKWSQIAKNLV-GRIGKQCRERWHNHL 166
                            799*****************************.*************97 PP
2Myb_DNA-binding55.71.1e-17173214245
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            + WT+eE+++lv+a+  +G++ W+ Ia+ ++ gR+++++k++w+
  GSMUA_Achr6P33700_001 173 DMWTEEEEKQLVEAHMSFGNR-WAEIAKQIP-GRSENSIKNHWN 214
                            67*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.027115170IPR017930Myb domain
SuperFamilySSF466892.06E-30117213IPR009057Homeodomain-like
SMARTSM007174.5E-17119168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-27121173IPR009057Homeodomain-like
CDDcd001671.90E-15123166No hitNo description
PfamPF139219.2E-19123183No hitNo description
SMARTSM007179.5E-16171219IPR001005SANT/Myb domain
PROSITE profilePS5129417.738171221IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-21174219IPR009057Homeodomain-like
CDDcd001673.08E-13175217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEAEGGAAAG CCDGFAGKRL CGPLPPPPLL TPLERFLSSC CREEPDHGDP QGLTDVLLGA  60
VGFSANGNLV GGSCEKVVKR EEWEQQQQQQ QQQQQQQQQK GASNNSSFSN GNSAAANVVK  120
GQWTAEEDSM LVRLVKQHGV RKWSQIAKNL VGRIGKQCRE RWHNHLRPDI KKDMWTEEEE  180
KQLVEAHMSF GNRWAEIAKQ IPGRSENSIK NHWNATKRKL NAKRRSKRKA TKGGRCPPSV  240
LQNYILSKTR DLSKTCSTTN TTTVSKQLDT PYWQPHNPSS GQDPTSSVEE SFPYIHEVLE  300
QSSVPNGSIE EGGIHGGEAH NSCNHYSLDF LHFDDDDFLP IGDVCQCMQL PYSAPETIAI  360
DPACHRPNTW SELYPPCLFD GALSSSTGLL EMDSKSQILK DQASSSSKRD LDLVEMMSLQ  420
FSSSQRSSSS NSMLLSSDPN YL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-421172214109B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682912.10.0PREDICTED: transcription factor MYB44
TrEMBLM0TCG30.0M0TCG3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P33700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-56myb domain protein 119