PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P33620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 275aa    MW: 30617.5 Da    PI: 8.8764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P33620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.1e-1361109248
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                            g+WT+eE + + da +++ g+   +W+++a++++ g+t  ++k +++ +l
  GSMUA_Achr6P33620_001  61 GSWTQEENKHFEDALAKFDGDtpdRWEKVAACIP-GKTVADVKRHYRHLL 109
                            79********************************.***********9875 PP
2Myb_DNA-binding45.91.3e-14127171347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+ l++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
  GSMUA_Achr6P33620_001 127 PWTEEEHRLFLLGLRKYGKGDWRNISRNFVTTRTPTQVASHAQKY 171
                            8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-756111IPR009057Homeodomain-like
PROSITE profilePS512937.46258112IPR017884SANT domain
SMARTSM007171.8E-959111IPR001005SANT/Myb domain
SuperFamilySSF466892.97E-1360112IPR009057Homeodomain-like
PfamPF002499.3E-1061108IPR001005SANT/Myb domain
CDDcd001674.64E-962109No hitNo description
PROSITE profilePS5129419.715120176IPR017930Myb domain
SuperFamilySSF466898.28E-18122176IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17123174IPR006447Myb domain, plants
SMARTSM007174.7E-13124174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-12124170IPR009057Homeodomain-like
CDDcd001671.86E-11127172No hitNo description
PfamPF002493.1E-12127171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNPSVVLLLL LPLDLCCKIP VSNCEPMMTG SRMEATATAT ATATSYSSSD WVLGQKRCGN  60
GSWTQEENKH FEDALAKFDG DTPDRWEKVA ACIPGKTVAD VKRHYRHLLD DRCGLRAPDH  120
ERKKGVPWTE EEHRLFLLGL RKYGKGDWRN ISRNFVTTRT PTQVASHAQK YFIRLNSGGK  180
DKRRSSIHDI TTANLPDVKP LSPSQLSNLS AQSSPFSVIV DSNPPTEADV SRFMQQHQFG  240
VTPYGSARGG VLHDSVVCDN ASLFQMRSSQ HHPRG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407560.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H79e-65DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0TCF50.0M0TCF5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P33620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-67MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]