PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P33470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 225aa    MW: 24463.6 Da    PI: 10.1716
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P33470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-18118163147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +g+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  GSMUA_Achr6P33470_001 118 KGPWSPEEDAILSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 163
                            79******************************.***********985 PP
2Myb_DNA-binding55.41.4e-17170214147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r ++T eEd +++ a++ +G++ W++Iar +  gRt++ +k++w++ 
  GSMUA_Achr6P33470_001 170 RRPFTDEEDRIIIAAHAIHGNK-WASIARLLE-GRTDNAIKNHWNST 214
                            679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.738113164IPR017930Myb domain
SuperFamilySSF466895.75E-31115211IPR009057Homeodomain-like
SMARTSM007175.2E-16117166IPR001005SANT/Myb domain
PfamPF002499.4E-18118163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-27119171IPR009057Homeodomain-like
CDDcd001672.46E-15120162No hitNo description
PROSITE profilePS5129426.975165219IPR017930Myb domain
SMARTSM007172.2E-16169217IPR001005SANT/Myb domain
PfamPF002499.7E-15170214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-23172218IPR009057Homeodomain-like
CDDcd001671.20E-12172215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSSSTLLTF ASLHRQQRLH ERSVDYGAQI AVKRSVVLLL FLRTQKVKER KLTEAPAMET  60
VVDPAPSTAS PSSPVVIVDG QAAGSASAAA GEGSSGDGVV RDGPPSGGGA AATEDRVKGP  120
WSPEEDAILS RLVSKFGARN WSLIARGIPG RSGKSCRLRW CNQLDPYVKR RPFTDEEDRI  180
IIAAHAIHGN KWASIARLLE GRTDNAIKNH WNSTLRRRCN EEAEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-421152204109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407576.11e-118PREDICTED: myb-like protein AA
TrEMBLM0TCE01e-163M0TCE0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P33470_0011e-163(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-60myb domain protein 109