PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P32970_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 1618aa MW: 176767 Da PI: 6.2386 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.9e-07 | 789 | 830 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+++E + + +++G++ +++I+ ++ ++t +c+++++k GSMUA_Achr6P32970_001 789 PWSQDEKVVFMEMLAKYGKD-FARISLSLN-HKTTADCIEFYYK 830 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 28 | 5e-09 | 996 | 1034 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT +E ++v+a ++G++ +++I+++m R+++qck ++ GSMUA_Achr6P32970_001 996 WTDDEKSIFVQALSMYGKD-FTRISSCMR--RSREQCKIFFS 1034 *****************99.********8..*******8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-12 | 775 | 836 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.23 | 785 | 836 | IPR017884 | SANT domain |
SMART | SM00717 | 8.0E-8 | 786 | 834 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-4 | 788 | 833 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 789 | 830 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.282 | 991 | 1041 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-7 | 992 | 1039 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.95E-8 | 993 | 1041 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-5 | 996 | 1033 | No hit | No description |
Pfam | PF00249 | 1.4E-6 | 996 | 1033 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1618 aa Download sequence Send to blast |
MPPEPLPWDR KEYAFKDHKK NERGDALGGG GGGGGSSSAS RWRDPYHGPR DLPRASPRRP 60 LSGHYRQGGS YHQVHPEDSS GHGCTPSRSD RFWFEEDGFR PLSVRYGGGC RSSSGGSSRD 120 SRGSFRRSPY WDSGDSRQHH HDPHATAQRP VAAPISCTSQ TSQKEQNDKN GGVDDSLDTG 180 HRFDHRDNSL VSIPWKKWSR PGSLVSAKTG RSELGEAGLE TGLPLGKETP MQSPVISSLP 240 SDEGVSKKKP RLGWGQGLAK YEKQKVEGST ETSVGGGKGA SSDNGQQVTG ISGCLSPTTS 300 QSATCSSSPE CISYRLINPQ LSHFLGTANS PYSAVFSGTE DKPCSRTVND DNGMSQNSDL 360 PGSTLRSFCE EVSIDLDHLE ASFISSLYSL LADLFQSEDA FSGDSTFTKH SALNKLLKLK 420 GDISNGLEKI ECEIDLLEKE LKSLDCDAKA CSYQTSFNLA NDSAAEACIQ PLVGVPNESN 480 HLKDQNVDLT QMAYVQHVPC NSLVEHGTIV EDNNVIHLET SSSKIGFGIE KLSESHSSIE 540 DERLKSSEVQ QTVDSDDGGR LMVASEDGNR DYVDRGSVSA CISSDETLRG NIHSNLITSI 600 MDFNKNASEH AWKLLGTSLP TNPLQSDIWG LVNLTACRQN DSTIKEKLSI RKCQVKFKER 660 VLTLKFKALH HLWKEDLRLL YIRKLRTKST KRFELSNRSS QNGSQKQRSS IRSRFALPAG 720 NLTLVPTTEI VDFTGKLLSD SLIKLYRNNL KMPALILDDK EKTYSRFVTQ NGLIEDPLIF 780 EKERATINPW SQDEKVVFME MLAKYGKDFA RISLSLNHKT TADCIEFYYK NHKSESFKEV 840 KKCLDLRKQQ QCLRANTYLV ASGNKWNHEI SCVSPDRLAS APIAVAHGHG TARSEKNIGS 900 VVYGTYNDVK VPYLEGANSV NISGEERESV AADVLAGIRG ALFSEAMSSC DTSSIDPSEK 960 MNCITADRLL TPEITQNLDE DDCSDEGSGE LDSADWTDDE KSIFVQALSM YGKDFTRISS 1020 CMRRSREQCK IFFSKARKCL GLDVILQGTV NAGMPLSDTN GGRSDTDDAC VAEMNSAICS 1080 TQSCSKMGVD ASQSVANISY EGIAHVASTH FHVETDRSNK EDEDVSAGPD LDGGGEKVDT 1140 KYVSTIHDDE LVGEADNLQS DACPKESIVD ALGACMDGQS KQLTASIVHK TGTDGSYPAD 1200 GLKEVDSKAS PTTEVGLSNK KSINNNFTAI GNGSLNTVPD SNASGAPLLS GNKVNVCHRL 1260 TFGPNYQQQM QLDLLPCVPK KHQTVLLKQE DVHSIPLNSF LPDPSSVCFG GPIDVSSETT 1320 LNFEEHGSKW HQNMVKRDIY QQYITRNLPV NQVDHNMHIL RGYPLQALNQ EVKRETDLPA 1380 GEKRSLLETE SKRCGVSQSN QFFMSDMHWN KSDPSHSRSS MSCPSRSENH SEAELRTCVK 1440 NACSEIEEHR TGDVKLFGKI LSHTCSLQKS GTSSHESNVP SSPKLDGCST ANSSCIVKDG 1500 NRLVSDVGNG QVGLEDPPAR TYGFWDGKRV QNGNPSLPDT TAMLAKYQGS LAGVSFYSTK 1560 DAIPIRNGVV TDYPQSWILV GGGGVSDPVA ALKMHYAARA SVGSTDMMES WRGDMGGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406931.1 | 0.0 | PREDICTED: uncharacterized protein LOC103989714 isoform X1 | ||||
Refseq | XP_018683202.1 | 0.0 | PREDICTED: uncharacterized protein LOC103989714 isoform X2 | ||||
TrEMBL | M0TC91 | 0.0 | M0TC91_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P32970_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-102 | MYB family protein |