PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32970_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 1618aa    MW: 176767 Da    PI: 6.2386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.9e-07789830346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +W+++E   + +  +++G++ +++I+  ++ ++t  +c+++++k
  GSMUA_Achr6P32970_001 789 PWSQDEKVVFMEMLAKYGKD-FARISLSLN-HKTTADCIEFYYK 830
                            8*****************99.*********.***********98 PP

2Myb_DNA-binding285e-099961034445
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding    4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                             WT +E  ++v+a  ++G++ +++I+++m   R+++qck ++ 
  GSMUA_Achr6P32970_001  996 WTDDEKSIFVQALSMYGKD-FTRISSCMR--RSREQCKIFFS 1034
                             *****************99.********8..*******8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-12775836IPR009057Homeodomain-like
PROSITE profilePS5129313.23785836IPR017884SANT domain
SMARTSM007178.0E-8786834IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-4788833IPR009057Homeodomain-like
PfamPF002491.1E-5789830IPR001005SANT/Myb domain
PROSITE profilePS5129312.2829911041IPR017884SANT domain
SMARTSM007171.3E-79921039IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-89931041IPR009057Homeodomain-like
CDDcd001671.48E-59961033No hitNo description
PfamPF002491.4E-69961033IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1618 aa     Download sequence    Send to blast
MPPEPLPWDR KEYAFKDHKK NERGDALGGG GGGGGSSSAS RWRDPYHGPR DLPRASPRRP  60
LSGHYRQGGS YHQVHPEDSS GHGCTPSRSD RFWFEEDGFR PLSVRYGGGC RSSSGGSSRD  120
SRGSFRRSPY WDSGDSRQHH HDPHATAQRP VAAPISCTSQ TSQKEQNDKN GGVDDSLDTG  180
HRFDHRDNSL VSIPWKKWSR PGSLVSAKTG RSELGEAGLE TGLPLGKETP MQSPVISSLP  240
SDEGVSKKKP RLGWGQGLAK YEKQKVEGST ETSVGGGKGA SSDNGQQVTG ISGCLSPTTS  300
QSATCSSSPE CISYRLINPQ LSHFLGTANS PYSAVFSGTE DKPCSRTVND DNGMSQNSDL  360
PGSTLRSFCE EVSIDLDHLE ASFISSLYSL LADLFQSEDA FSGDSTFTKH SALNKLLKLK  420
GDISNGLEKI ECEIDLLEKE LKSLDCDAKA CSYQTSFNLA NDSAAEACIQ PLVGVPNESN  480
HLKDQNVDLT QMAYVQHVPC NSLVEHGTIV EDNNVIHLET SSSKIGFGIE KLSESHSSIE  540
DERLKSSEVQ QTVDSDDGGR LMVASEDGNR DYVDRGSVSA CISSDETLRG NIHSNLITSI  600
MDFNKNASEH AWKLLGTSLP TNPLQSDIWG LVNLTACRQN DSTIKEKLSI RKCQVKFKER  660
VLTLKFKALH HLWKEDLRLL YIRKLRTKST KRFELSNRSS QNGSQKQRSS IRSRFALPAG  720
NLTLVPTTEI VDFTGKLLSD SLIKLYRNNL KMPALILDDK EKTYSRFVTQ NGLIEDPLIF  780
EKERATINPW SQDEKVVFME MLAKYGKDFA RISLSLNHKT TADCIEFYYK NHKSESFKEV  840
KKCLDLRKQQ QCLRANTYLV ASGNKWNHEI SCVSPDRLAS APIAVAHGHG TARSEKNIGS  900
VVYGTYNDVK VPYLEGANSV NISGEERESV AADVLAGIRG ALFSEAMSSC DTSSIDPSEK  960
MNCITADRLL TPEITQNLDE DDCSDEGSGE LDSADWTDDE KSIFVQALSM YGKDFTRISS  1020
CMRRSREQCK IFFSKARKCL GLDVILQGTV NAGMPLSDTN GGRSDTDDAC VAEMNSAICS  1080
TQSCSKMGVD ASQSVANISY EGIAHVASTH FHVETDRSNK EDEDVSAGPD LDGGGEKVDT  1140
KYVSTIHDDE LVGEADNLQS DACPKESIVD ALGACMDGQS KQLTASIVHK TGTDGSYPAD  1200
GLKEVDSKAS PTTEVGLSNK KSINNNFTAI GNGSLNTVPD SNASGAPLLS GNKVNVCHRL  1260
TFGPNYQQQM QLDLLPCVPK KHQTVLLKQE DVHSIPLNSF LPDPSSVCFG GPIDVSSETT  1320
LNFEEHGSKW HQNMVKRDIY QQYITRNLPV NQVDHNMHIL RGYPLQALNQ EVKRETDLPA  1380
GEKRSLLETE SKRCGVSQSN QFFMSDMHWN KSDPSHSRSS MSCPSRSENH SEAELRTCVK  1440
NACSEIEEHR TGDVKLFGKI LSHTCSLQKS GTSSHESNVP SSPKLDGCST ANSSCIVKDG  1500
NRLVSDVGNG QVGLEDPPAR TYGFWDGKRV QNGNPSLPDT TAMLAKYQGS LAGVSFYSTK  1560
DAIPIRNGVV TDYPQSWILV GGGGVSDPVA ALKMHYAARA SVGSTDMMES WRGDMGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406931.10.0PREDICTED: uncharacterized protein LOC103989714 isoform X1
RefseqXP_018683202.10.0PREDICTED: uncharacterized protein LOC103989714 isoform X2
TrEMBLM0TC910.0M0TC91_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62993549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-102MYB family protein