PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 456aa    MW: 48371.4 Da    PI: 8.1284
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.13.1e-07183198116
                            ---SS-EEEEEEE--T CS
                   WRKY   1 ldDgynWrKYGqKevk 16 
                            ldDgynWrKYGqK+++
  GSMUA_Achr6P32720_001 183 LDDGYNWRKYGQKQIT 198
                            59************96 PP
2WRKY104.94.2e-33321379159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d + v++tYeg+Hnh+
  GSMUA_Achr6P32720_001 321 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTMGCPVRKHVERASHDLRSVITTYEGKHNHD 379
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-6177198IPR003657WRKY domain
PROSITE profilePS508118.547178197IPR003657WRKY domain
SuperFamilySSF1182906.15E-8179211IPR003657WRKY domain
SMARTSM007743.3E-4183210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-37306381IPR003657WRKY domain
SuperFamilySSF1182903.79E-29313381IPR003657WRKY domain
PROSITE profilePS5081138.457316381IPR003657WRKY domain
SMARTSM007744.0E-38321380IPR003657WRKY domain
PfamPF031061.5E-25322379IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MASPAGSFDT SANSTPPAAF TFSSPYASFS DLLAGGGGDD GGGGGGRSLS RDFAGTGGGG  60
VPKFKSAPPP SLPISRPPIS PSSCFAIPAG LSPAELLDSP VLLSSANILA SPTTGTFPAQ  120
ALNLRIASAA CRPENKDGTR ASSDFSFQTI ANPRSFLPAL VRSPERPRAL EAPRCRQSRL  180
RVLDDGYNWR KYGQKQITEI VYKGTHNHPK PQANRRSSSA AAQAIQGPVP SEASENSFGG  240
RSGTPLDSVP TPDDSSVSFG DDDVDMSSQR SNQGGDDYEE DEPDAKRWKA EGESEGLSAA  300
GNRTVREPRV VVQTQSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTM GCPVRKHVER  360
ASHDLRSVIT TYEGKHNHDV PAARGSGGGG GGAHLLARPQ PENNGMAAAI RPSVMANHAN  420
PNNVFRGRPG ASETQMFPNK TKEEQKEDSF LDSLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-36312382878Probable WRKY transcription factor 4
2lex_A9e-36312382878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6204291e-114JX620429.1 Gossypium hirsutum clone NBRI_GE66665 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406893.10.0PREDICTED: WRKY transcription factor WRKY24-like
TrEMBLM0TC660.0M0TC66_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.12e-75WRKY DNA-binding protein 26