PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32330_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 270aa    MW: 31082.2 Da    PI: 6.6278
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.3e-51141411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeelvv+yL++k++ ++l++  +i+evd+yk++Pw+Lp+k+  +++ewyfF++rd+ky++g+r+nra+ sgyWkatg 
  GSMUA_Achr6P32330_001  14 LPPGFRFHPTDEELVVHYLCRKAACQRLPV-PIIAEVDLYKYDPWELPEKALFGQREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGA 100
                            79****************************.88***************8878899********************************* PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+v    +g+   +kk Lvfy+g+ap+g ktdW+mheyrl
  GSMUA_Achr6P32330_001 101 DKPVSPPgSGRPLAIKKALVFYHGKAPRGLKTDWIMHEYRL 141
                            ****99878889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-6310167IPR003441NAC domain
PROSITE profilePS5100560.16114167IPR003441NAC domain
PfamPF023656.9E-2615141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRRTRDAEA ELNLPPGFRF HPTDEELVVH YLCRKAACQR LPVPIIAEVD LYKYDPWELP  60
EKALFGQREW YFFTPRDRKY PNGSRPNRAA GSGYWKATGA DKPVSPPGSG RPLAIKKALV  120
FYHGKAPRGL KTDWIMHEYR LADTNRSPNR KGSLRLDDWV LCRLYNKKNS WEKKMQAKEE  180
AAMETSEINE DARSDSLRTP ESDIEHAGFP EVDDLVRQGC HPFHTLEKLK EESDWFVDLN  240
LEELQNPFAG IASLPVVDVV NQECCFFPSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-9831734174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406848.20.0PREDICTED: uncharacterized protein LOC103989655
SwissprotQ52QH41e-112NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLM0TC270.0M0TC27_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-89NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]