PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P32330_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 270aa MW: 31082.2 Da PI: 6.6278 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.3 | 4.3e-51 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yL++k++ ++l++ +i+evd+yk++Pw+Lp+k+ +++ewyfF++rd+ky++g+r+nra+ sgyWkatg GSMUA_Achr6P32330_001 14 LPPGFRFHPTDEELVVHYLCRKAACQRLPV-PIIAEVDLYKYDPWELPEKALFGQREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGA 100 79****************************.88***************8878899********************************* PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v +g+ +kk Lvfy+g+ap+g ktdW+mheyrl GSMUA_Achr6P32330_001 101 DKPVSPPgSGRPLAIKKALVFYHGKAPRGLKTDWIMHEYRL 141 ****99878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-63 | 10 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.161 | 14 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-26 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MGRRTRDAEA ELNLPPGFRF HPTDEELVVH YLCRKAACQR LPVPIIAEVD LYKYDPWELP 60 EKALFGQREW YFFTPRDRKY PNGSRPNRAA GSGYWKATGA DKPVSPPGSG RPLAIKKALV 120 FYHGKAPRGL KTDWIMHEYR LADTNRSPNR KGSLRLDDWV LCRLYNKKNS WEKKMQAKEE 180 AAMETSEINE DARSDSLRTP ESDIEHAGFP EVDDLVRQGC HPFHTLEKLK EESDWFVDLN 240 LEELQNPFAG IASLPVVDVV NQECCFFPSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-98 | 3 | 173 | 4 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406848.2 | 0.0 | PREDICTED: uncharacterized protein LOC103989655 | ||||
Swissprot | Q52QH4 | 1e-112 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | M0TC27 | 0.0 | M0TC27_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P32330_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-89 | NAC family protein |