PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 345aa    MW: 39370.2 Da    PI: 7.6965
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.11.8e-5371341128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+ +yL++++++ ++++ ++i+evdiyk++PwdLp+k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+
  GSMUA_Achr6P32320_001   7 LPPGFRFHPTDEELILHYLRNQASSVPCPV-SIIAEVDIYKFDPWDLPAKAMFGEQEWYFFSPRDRKYPNGVRPNRAAASGYWKATGT 93 
                            79****************************.89***************8877899********************************* PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+++++ ++e++g+kk Lvfykgr p+g+kt+W+mheyrl
  GSMUA_Achr6P32320_001  94 DKPIHRSgGNEHIGVKKALVFYKGRPPRGRKTNWIMHEYRL 134
                            *****9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-655166IPR003441NAC domain
PROSITE profilePS5100561.5477166IPR003441NAC domain
PfamPF023653.3E-278134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSDPASLPPG FRFHPTDEEL ILHYLRNQAS SVPCPVSIIA EVDIYKFDPW DLPAKAMFGE  60
QEWYFFSPRD RKYPNGVRPN RAAASGYWKA TGTDKPIHRS GGNEHIGVKK ALVFYKGRPP  120
RGRKTNWIMH EYRLAEAHHG NTYKPMKFKN ASMRLDDWVL CRIYKKNHNL QSVPPLVDQE  180
QEDSGSGDIY LSSFRNTEQP SGLRLQKSFS VSDFLENYSA PPSHLFDNLP EMQGSELALL  240
MAQPSTNQLK ADNSNCSNDN HTFAPYKIRE ESAAPVAANP TKRQRTTESY LDGMNDLLHP  300
WKKPSSDATI YTTEFSDQFD GTQCNLLNQR FFNQQILLNP QLGLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-72617119173NAC domain-containing protein 19
3swm_B1e-72617119173NAC domain-containing protein 19
3swm_C1e-72617119173NAC domain-containing protein 19
3swm_D1e-72617119173NAC domain-containing protein 19
3swp_A1e-72617119173NAC domain-containing protein 19
3swp_B1e-72617119173NAC domain-containing protein 19
3swp_C1e-72617119173NAC domain-containing protein 19
3swp_D1e-72617119173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406848.20.0PREDICTED: uncharacterized protein LOC103989655
SwissprotK4BNG75e-88NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLM0TC260.0M0TC26_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-90NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]