PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 346aa    MW: 38470 Da    PI: 5.1333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.93.3e-56171441129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee++++yL +kv ++++++ +++ evd++++ePwdLp+++k +ekew+fF+++d+ky+tg+r+nrat++g+Wkatgk
  GSMUA_Achr6P32290_001  17 LPPGFRFHPTDEEVITHYLSPKVVDHSFSA-TAMGEVDLNRCEPWDLPSNAKMGEKEWFFFCQKDRKYPTGTRTNRATETGFWKATGK 103
                            79**************************99.88***************989999********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+l+ +g +vg+kktLvfy+grapkgekt+Wvmheyrle
  GSMUA_Achr6P32290_001 104 DKEILKGRGVVVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 144
                            ***************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-6313169IPR003441NAC domain
PROSITE profilePS5100559.42317169IPR003441NAC domain
PfamPF023654.8E-2918143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MADVSVVSKE EEECMNLPPG FRFHPTDEEV ITHYLSPKVV DHSFSATAMG EVDLNRCEPW  60
DLPSNAKMGE KEWFFFCQKD RKYPTGTRTN RATETGFWKA TGKDKEILKG RGVVVGMKKT  120
LVFYRGRAPK GEKTNWVMHE YRLEGTSTLI PNLPKSAKDE WVVCKVFHKD TGLLKKSTLP  180
ALERIDSLGD DFLDSTALPP LMDPPCLDSA TRPGSSFSNK DDSLNFQDVH ASFSSMMGVD  240
YYQVGPDLPD SSSYSFLGSM NLSYLHQEGA MLGALAAAEN DAPSAITRHC KVEQSSNHSV  300
GCHSQETGLS TDHNTEISSV PSKHYDELGD PSSTVPGFDL ENFWQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-531517518174NAC domain-containing protein 19
3swm_B5e-531517518174NAC domain-containing protein 19
3swm_C5e-531517518174NAC domain-containing protein 19
3swm_D5e-531517518174NAC domain-containing protein 19
3swp_A5e-531517518174NAC domain-containing protein 19
3swp_B5e-531517518174NAC domain-containing protein 19
3swp_C5e-531517518174NAC domain-containing protein 19
3swp_D5e-531517518174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406844.10.0PREDICTED: NAC domain-containing protein 100-like
RefseqXP_009406845.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-105NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0TC230.0M0TC23_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-105NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]