PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P32250_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 38197.1 Da PI: 8.5075 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 66 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W ++Ed +l+d+v q+G+ +W++Ia++++ gR++k+c++rw++ GSMUA_Achr6P32250_001 66 RGHWRPDEDAKLKDLVSQHGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 111 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 118 | 161 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ GSMUA_Achr6P32250_001 118 RDAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 161 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.925 | 61 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 65 | 114 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.98E-28 | 65 | 159 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-17 | 66 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-27 | 67 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.89E-14 | 69 | 110 | No hit | No description |
PROSITE profile | PS51294 | 27.406 | 113 | 167 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-16 | 117 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 118 | 160 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 120 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.39E-8 | 129 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGFLPPVAPP FVTGSTHGER ECWGFQGLAE GHGNHGDRRS NREGKEEEAG YGHVHGNERQ 60 HRPCARGHWR PDEDAKLKDL VSQHGPQNWN LIAEKLQGRS GKSCRLRWFN QLDPRINRDA 120 FSEEEEERLL AAHRLYGNKW ALIARLFPGR TDNAVKNHWH VIMARKQREQ SNACRRRRPS 180 ASSSIPSLPH SLPNRKEVNP SNNACSGEST ITSTRDESAS TCADLSLGSF TSRIVPSFPN 240 GYSPSHQPHS YQAFNGSDGK VVTTSNRIYV KHGDSGGSFF THGVPKMLVP GFDQSDCTGT 300 GSASGASANE AVVYHMTNNT LHHGETEHGG EKIRLPFFDF LGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-32 | 66 | 166 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ010962 | 1e-51 | FJ010962.2 Musa balbisiana microsatellite MbIIHR56 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406840.1 | 0.0 | PREDICTED: myb-related protein Zm1-like | ||||
TrEMBL | M0TC19 | 0.0 | M0TC19_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P32250_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-61 | myb domain protein 105 |