PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P32240_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 389aa MW: 41968.9 Da PI: 5.085

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P32240_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127	5.8e-40	132	191	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s GSMUA_Achr6P32240_001 132 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKHS 191 7899******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-33	129	189	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	134	190	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	136	190	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	138	174	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MSEAKDPAIK LFGTTIPVVA SSPTRIADAE DSEVEAADTE PVVSAAEGQK MAIIFQDASE 60 GVTNVEVDNV LATETDEEDE GAPISSSGLT SSHKDEVNKT SIADEKIAEK GKSEDTKTET 120 DCSTQEKVLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP 180 VGAGRRKSKH SVALQSLPCV PTSPAGPLIG NGTVLRFGQE VPLCESVASV LGIRGEQAHS 240 CRPENGDWRS VPWGAGAVMA ATLPFPLMAA PFWGFTAWPN GTWNVSSTSN RGCSGNDSPT 300 LGKHSRDSNL ESEAETMEKS LWVPKTLRID DPEEAAKSSI WTALGIKPDM GGIIFQSKAE 360 KRANKSDVAR ILHANPAALS RFESFQEST

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MSEAKDPAIK LFGTTIPVVA SSPTRIADAE DSEVEAADTE PVVSAAEGQK MAIIFQDASE  60
GVTNVEVDNV LATETDEEDE GAPISSSGLT SSHKDEVNKT SIADEKIAEK GKSEDTKTET  120
DCSTQEKVLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP  180
VGAGRRKSKH SVALQSLPCV PTSPAGPLIG NGTVLRFGQE VPLCESVASV LGIRGEQAHS  240
CRPENGDWRS VPWGAGAVMA ATLPFPLMAA PFWGFTAWPN GTWNVSSTSN RGCSGNDSPT  300
LGKHSRDSNL ESEAETMEKS LWVPKTLRID DPEEAAKSSI WTALGIKPDM GGIIFQSKAE  360
KRANKSDVAR ILHANPAALS RFESFQEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406839.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	M0TC18	0.0	M0TC18_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P32240_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-70	cycling DOF factor 2