PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P31840_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 385aa MW: 41691.5 Da PI: 4.7288 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.7 | 7.5e-11 | 155 | 178 | 2 | 25 |
--SS-EEEEEEE--TT-SS-EEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYY 25 +D ++WrKYGqK++kgs++pr+ Y GSMUA_Achr6P31840_001 155 SDMWAWRKYGQKPIKGSPYPRQGY 178 79*******************877 PP | |||||||
2 | WRKY | 31.7 | 3.1e-10 | 196 | 225 | 30 | 59 |
TT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 30 agCpvkkkversaedpkvveitYegeHnhe 59 ++C+++k+ver++edp +++itY+ eHnh+ GSMUA_Achr6P31840_001 196 PRCQARKQVERNREDPGILVITYTAEHNHP 225 49***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-21 | 140 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.603 | 149 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-17 | 153 | 227 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-21 | 154 | 226 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-14 | 156 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDDNDWDLYA VVRGCSAAAV AAASDPLSSL PPPLPVVKEG SLGGGKDEAL GFPDLMGTST 60 SPYELEELCQ PFYIKTHLQP LQQRQLQPLL VPKPSYRPSC APATSVFPAL AVVPHQLQQQ 120 PRQPQRPVSQ TPRSKRRKNQ QKKVVCQVPA DGASSDMWAW RKYGQKPIKG SPYPRQGYNP 180 PDLLLLFRFN LCFQLPRCQA RKQVERNRED PGILVITYTA EHNHPVPTHR NSLSGSTRQK 240 FPPTGSSAQP PPASGCEGDG EQLKSPGSHV PSSPLPSSAA AQRPSPTTAL TDSVESKDDE 300 EDEDEDEEEE ELLTVGDMEM MGSDDLIFLG MEVIDGSTNT AGTTKSPAMV SVGSASFEED 360 GGFEEHFFRS PWVANDNAAA AAGGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-13 | 138 | 228 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-13 | 138 | 228 | 2 | 80 | Disease resistance protein RRS1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406781.1 | 0.0 | PREDICTED: WRKY transcription factor 22-like | ||||
TrEMBL | M0TBX9 | 0.0 | M0TBX9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P31840_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5358 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-39 | WRKY family protein |