PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31840_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 385aa    MW: 41691.5 Da    PI: 4.7288
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.77.5e-11155178225
                            --SS-EEEEEEE--TT-SS-EEEE CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYY 25 
                            +D ++WrKYGqK++kgs++pr+ Y
  GSMUA_Achr6P31840_001 155 SDMWAWRKYGQKPIKGSPYPRQGY 178
                            79*******************877 PP

2WRKY31.73.1e-101962253059
                            TT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  30 agCpvkkkversaedpkvveitYegeHnhe 59 
                            ++C+++k+ver++edp +++itY+ eHnh+
  GSMUA_Achr6P31840_001 196 PRCQARKQVERNREDPGILVITYTAEHNHP 225
                            49***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-21140227IPR003657WRKY domain
PROSITE profilePS5081125.603149227IPR003657WRKY domain
SuperFamilySSF1182904.05E-17153227IPR003657WRKY domain
SMARTSM007748.5E-21154226IPR003657WRKY domain
PfamPF031062.6E-14156225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDDNDWDLYA VVRGCSAAAV AAASDPLSSL PPPLPVVKEG SLGGGKDEAL GFPDLMGTST  60
SPYELEELCQ PFYIKTHLQP LQQRQLQPLL VPKPSYRPSC APATSVFPAL AVVPHQLQQQ  120
PRQPQRPVSQ TPRSKRRKNQ QKKVVCQVPA DGASSDMWAW RKYGQKPIKG SPYPRQGYNP  180
PDLLLLFRFN LCFQLPRCQA RKQVERNRED PGILVITYTA EHNHPVPTHR NSLSGSTRQK  240
FPPTGSSAQP PPASGCEGDG EQLKSPGSHV PSSPLPSSAA AQRPSPTTAL TDSVESKDDE  300
EDEDEDEEEE ELLTVGDMEM MGSDDLIFLG MEVIDGSTNT AGTTKSPAMV SVGSASFEED  360
GGFEEHFFRS PWVANDNAAA AAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-13138228280Disease resistance protein RRS1
5w3x_D2e-13138228280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406781.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLM0TBX90.0M0TBX9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-39WRKY family protein