PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 335aa    MW: 36926.7 Da    PI: 7.0643
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W+++Ed +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  GSMUA_Achr6P31740_001 14 RGPWSPDEDAKLKSYIEQHGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                           89*********************************************97 PP
2Myb_DNA-binding41.82.5e-1369111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd ++ ++    G++ W+ Ia++++ gRt++++k++w++
  GSMUA_Achr6P31740_001  69 GGFSEEEDSIICRLYISIGSR-WSIIAAHLP-GRTDNDVKNHWNT 111
                            569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.848962IPR017930Myb domain
SuperFamilySSF466892.87E-2612109IPR009057Homeodomain-like
SMARTSM007173.9E-121364IPR001005SANT/Myb domain
PfamPF002491.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-241569IPR009057Homeodomain-like
CDDcd001673.71E-91662No hitNo description
PROSITE profilePS5129422.763117IPR017930Myb domain
SMARTSM007172.9E-1267115IPR001005SANT/Myb domain
PfamPF002491.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2370117IPR009057Homeodomain-like
CDDcd001675.39E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRAPCCDKA KVKRGPWSPD EDAKLKSYIE QHGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDSIIC RLYISIGSRW SIIAAHLPGR TDNDVKNHWN TRLKKKLFGK  120
QCDGRQPPRK LGRPKQESIS YGCNGDGLGV HPADRWTPQP MHPIGHAGHT EGPSHGSPLV  180
APATPPLPLP ICDSATLLSS SLRRGSSRED SQSSNGFSTE LDELFQFDSV KLEGFDCFDG  240
AEGMNWNEES SLMCPDAVQQ WPPLEEPSPT NEQVIGLIGL LDSKMSLAVT SYIDQLLTFP  300
ISVWQHHVSS TAFSSLSSFI DQLELPAALS QLSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406763.10.0PREDICTED: transcription factor MYB30-like
TrEMBLM0TBW90.0M0TBW9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-77myb domain protein 68