PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31580_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 646aa    MW: 71590.8 Da    PI: 8.4553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.7e-50241492128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                             pGfrFhPtdeelv +yL++kve+k +++ e+ike+diyk++PwdLpk ++a+eke yfF+ r +ky+++ r+nr+t+sg+Wkatg d
  GSMUA_Achr6P31580_001  24 LPGFRFHPTDEELVGFYLRRKVEKKGFSI-EIIKEIDIYKHDPWDLPKVISAGEKERYFFCLRGRKYRNSIRPNRVTRSGFWKATGID 110
                            69***************************.89***************99999************************************ PP

                    NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++v+s +g  +glkk+Lv+ykg+a kg+kt+W+mhe+rl
  GSMUA_Achr6P31580_001 111 RPVCSDTGDCIGLKKSLVYYKGSAGKGTKTEWMMHEFRL 149
                            *************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5322175IPR003441NAC domain
PROSITE profilePS5100551.24923175IPR003441NAC domain
PfamPF023652.9E-2425149IPR003441NAC domain
Gene3DG3DSA:3.40.50.10003.5E-7353365IPR023214HAD-like domain
SuperFamilySSF567844.3E-7359508IPR023214HAD-like domain
Gene3DG3DSA:3.40.50.10003.5E-7454509IPR023214HAD-like domain
SuperFamilySSF567844.3E-7567622IPR023214HAD-like domain
Gene3DG3DSA:3.40.50.10003.5E-7570632IPR023214HAD-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MEERRETSGE QQVAVEEEEE DVVLPGFRFH PTDEELVGFY LRRKVEKKGF SIEIIKEIDI  60
YKHDPWDLPK VISAGEKERY FFCLRGRKYR NSIRPNRVTR SGFWKATGID RPVCSDTGDC  120
IGLKKSLVYY KGSAGKGTKT EWMMHEFRLP SKNTSNTSLS MQEAEVWTIC RILKRNGVCH  180
RKSPPKWKES NNTKTQADSS SKTSSFESDT SSPNVNDIFG DGNWDELGRI MESMTDQDMA  240
SCYAVAASRI NLRLSFPLPF SCDPPFPPRP MAAAAVARCL VLSGSLPASP VAWHDVPKNP  300
SPSPPPPLPC VAGFCRGSVG FPTCKNAKSP RFSSSRRFSS SDLQDSKPAQ DLALLLEVEG  360
VIADIYRLGN RQAFNVAFQK LGLDCANWTE PIYADLSRKA AGDEERMLIL FFNRIGWPAS  420
LPTNEKEAFM KRVLREKQKA LEDFSTSSSL TLRPGVENFI DDALNEGLPV ALLIAYSKYG  480
DKACRSIIEK LGQERLSKVK IVGKEEVKES LYGQLVLGKG VSSSLEELLA KEVQKAASME  540
KQRIAQDVAS ILKLSVDIDI SSPESLENII VTLRAGAEYT GLPVDNCVLI AGSQSGVYGA  600
ERIGMPCVVI RSGATARAEF RSAKAVMDAF GGADLTLSKL RRKKWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-462518119171NO APICAL MERISTEM PROTEIN
1ut4_B6e-462518119171NO APICAL MERISTEM PROTEIN
1ut7_A6e-462518119171NO APICAL MERISTEM PROTEIN
1ut7_B6e-462518119171NO APICAL MERISTEM PROTEIN
3swm_A7e-462518122174NAC domain-containing protein 19
3swm_B7e-462518122174NAC domain-containing protein 19
3swm_C7e-462518122174NAC domain-containing protein 19
3swm_D7e-462518122174NAC domain-containing protein 19
3swp_A7e-462518122174NAC domain-containing protein 19
3swp_B7e-462518122174NAC domain-containing protein 19
3swp_C7e-462518122174NAC domain-containing protein 19
3swp_D7e-462518122174NAC domain-containing protein 19
4dul_A6e-462518119171NAC domain-containing protein 19
4dul_B6e-462518119171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406748.10.0PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At3g48420
TrEMBLM0TBV30.0M0TBV3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31580_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-80NAC domain containing protein 42