PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P31580_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 646aa MW: 71590.8 Da PI: 8.4553 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.8 | 2.7e-50 | 24 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrFhPtdeelv +yL++kve+k +++ e+ike+diyk++PwdLpk ++a+eke yfF+ r +ky+++ r+nr+t+sg+Wkatg d GSMUA_Achr6P31580_001 24 LPGFRFHPTDEELVGFYLRRKVEKKGFSI-EIIKEIDIYKHDPWDLPKVISAGEKERYFFCLRGRKYRNSIRPNRVTRSGFWKATGID 110 69***************************.89***************99999************************************ PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+s +g +glkk+Lv+ykg+a kg+kt+W+mhe+rl GSMUA_Achr6P31580_001 111 RPVCSDTGDCIGLKKSLVYYKGSAGKGTKTEWMMHEFRL 149 *************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-53 | 22 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.249 | 23 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-24 | 25 | 149 | IPR003441 | NAC domain |
Gene3D | G3DSA:3.40.50.1000 | 3.5E-7 | 353 | 365 | IPR023214 | HAD-like domain |
SuperFamily | SSF56784 | 4.3E-7 | 359 | 508 | IPR023214 | HAD-like domain |
Gene3D | G3DSA:3.40.50.1000 | 3.5E-7 | 454 | 509 | IPR023214 | HAD-like domain |
SuperFamily | SSF56784 | 4.3E-7 | 567 | 622 | IPR023214 | HAD-like domain |
Gene3D | G3DSA:3.40.50.1000 | 3.5E-7 | 570 | 632 | IPR023214 | HAD-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MEERRETSGE QQVAVEEEEE DVVLPGFRFH PTDEELVGFY LRRKVEKKGF SIEIIKEIDI 60 YKHDPWDLPK VISAGEKERY FFCLRGRKYR NSIRPNRVTR SGFWKATGID RPVCSDTGDC 120 IGLKKSLVYY KGSAGKGTKT EWMMHEFRLP SKNTSNTSLS MQEAEVWTIC RILKRNGVCH 180 RKSPPKWKES NNTKTQADSS SKTSSFESDT SSPNVNDIFG DGNWDELGRI MESMTDQDMA 240 SCYAVAASRI NLRLSFPLPF SCDPPFPPRP MAAAAVARCL VLSGSLPASP VAWHDVPKNP 300 SPSPPPPLPC VAGFCRGSVG FPTCKNAKSP RFSSSRRFSS SDLQDSKPAQ DLALLLEVEG 360 VIADIYRLGN RQAFNVAFQK LGLDCANWTE PIYADLSRKA AGDEERMLIL FFNRIGWPAS 420 LPTNEKEAFM KRVLREKQKA LEDFSTSSSL TLRPGVENFI DDALNEGLPV ALLIAYSKYG 480 DKACRSIIEK LGQERLSKVK IVGKEEVKES LYGQLVLGKG VSSSLEELLA KEVQKAASME 540 KQRIAQDVAS ILKLSVDIDI SSPESLENII VTLRAGAEYT GLPVDNCVLI AGSQSGVYGA 600 ERIGMPCVVI RSGATARAEF RSAKAVMDAF GGADLTLSKL RRKKWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-46 | 25 | 181 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-46 | 25 | 181 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-46 | 25 | 181 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-46 | 25 | 181 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-46 | 25 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-46 | 25 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-46 | 25 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-46 | 25 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-46 | 25 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-46 | 25 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-46 | 25 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-46 | 25 | 181 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-46 | 25 | 181 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-46 | 25 | 181 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406748.1 | 0.0 | PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At3g48420 | ||||
TrEMBL | M0TBV3 | 0.0 | M0TBV3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P31580_001 | 0.0 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-80 | NAC domain containing protein 42 |