PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 244aa    MW: 27522.8 Da    PI: 7.4758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171663148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g WT eEd +lv  ++++G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr6P31520_001 16 KGTWTSEEDTKLVAFIHKHGRGNWRALPKQAGLLRCGKSCRLRWINYL 63
                           799*****************************99************97 PP
2Myb_DNA-binding51.81.9e-1669114148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE e ++++ +qlG++ W++Ia++++ gRt++++k+ w+++l
  GSMUA_Achr6P31520_001  69 RGNFTEEEVETIIRLQRQLGNR-WSKIASCLP-GRTDNEIKNLWNTHL 114
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4471163IPR017930Myb domain
SuperFamilySSF466892.64E-2913110IPR009057Homeodomain-like
SMARTSM007171.9E-131565IPR001005SANT/Myb domain
PfamPF002491.5E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-231770IPR009057Homeodomain-like
CDDcd001671.78E-101863No hitNo description
PROSITE profilePS5129424.70864118IPR017930Myb domain
SMARTSM007172.5E-1568116IPR001005SANT/Myb domain
PfamPF002493.0E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2571118IPR009057Homeodomain-like
CDDcd001672.43E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRAPCCD KVGLNKGTWT SEEDTKLVAF IHKHGRGNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDIKRG NFTEEEVETI IRLQRQLGNR WSKIASCLPG RTDNEIKNLW NTHLKRRLGG  120
EQTGSSRAHS SCGKVGDEQD HKQESINESS SSSSCISSSE SHVAPRVTCS GPHDETKNRF  180
IQDYSIELQV WGGVMDEFSF FVPPYVGPMA EGVHRSTATT SEEKATREIE DDGWLAYLEE  240
ELQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406740.10.0PREDICTED: myb-related protein Zm1-like
TrEMBLM0TBU70.0M0TBU7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.17e-68myb domain protein 58