PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P31410_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 593aa MW: 68666.5 Da PI: 9.8653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.2 | 2.8e-11 | 341 | 384 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT++Ed +l av+ +G + W +a+++ gR + qc +rw+k l GSMUA_Achr6P31410_001 341 DWTEDEDAKLRVAVEYYGDN-WQMVASCLE-GRVGPQCSNRWNKTL 384 6*****************77.*********.************975 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2.1e-15 | 392 | 436 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ av ++G ++W++Ia + gRt qc++rw++ GSMUA_Achr6P31410_001 392 GRWSVDEDKRLKVAVMLFGAKNWNKIAWFAP-GRTQVQCRERWHNC 436 8******************************.************96 PP | |||||||
3 | Myb_DNA-binding | 52.6 | 1.1e-16 | 445 | 485 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eEd +l+da +++G+ W++Ia++++ Rt++qc+ rw GSMUA_Achr6P31410_001 445 PWTAEEDAKLLDARAMHGNC-WSKIAACIP-PRTDNQCRRRWK 485 8*****************99.*********.9**********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.424 | 184 | 278 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6 | 188 | 282 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-8 | 190 | 207 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-8 | 252 | 293 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.921 | 281 | 333 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.81E-22 | 285 | 380 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.047 | 285 | 335 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-11 | 294 | 339 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.494 | 334 | 388 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-9 | 338 | 386 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-15 | 340 | 386 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.0E-9 | 342 | 390 | No hit | No description |
CDD | cd00167 | 1.17E-6 | 342 | 384 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 387 | 437 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.97E-30 | 388 | 484 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.82 | 389 | 437 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-12 | 390 | 439 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-14 | 392 | 436 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.44E-10 | 393 | 435 | No hit | No description |
PROSITE profile | PS51294 | 21.648 | 438 | 492 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-20 | 438 | 488 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-16 | 442 | 490 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 445 | 485 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.32E-13 | 445 | 488 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MSWTIHGWVR IVASCGIFLL DKATTWCRLG TKTPNRSTEL SKEHGYSHTE PHFPEHEAWS 60 SNVKDLTSSK FPKSAHNFVN ALKKNRSCQK FIRRKLLEIE AKIEKNKELK ERIKCLMDFQ 120 VACKRKVANI LYQKKDPRIT LISLKRSTSE KSSKTTLKKV PASYIGPNEN SHVSKYKMVL 180 KRFPISLSKQ PWSNIEKENL VKGIKQQYQE MLILNSMNME SDAEGITDSN LMSAITLSDP 240 EFTAEKIRSF IPLVNWNRLA SMYAMGRAGA ECEARWLNCE DSMINHSPWT VMEDKKLLFI 300 VQERGIYNWI DISITLGTHR TPFQCLVRYQ RSLNPHILNK DWTEDEDAKL RVAVEYYGDN 360 WQMVASCLEG RVGPQCSNRW NKTLNPERKK VGRWSVDEDK RLKVAVMLFG AKNWNKIAWF 420 APGRTQVQCR ERWHNCLDPT LNLKPWTAEE DAKLLDARAM HGNCWSKIAA CIPPRTDNQC 480 RRRWKILLPG ELISLQAAAQ IKKTALISNF VDRESERPAI GPNDFTPLIN SNTMFDKIGG 540 AKVRKKRQRY CSLDIHWFSL GYSVFIPLFL VLNYICLLSL EEFAYLHLEN IMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-31 | 237 | 484 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-31 | 237 | 484 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018682480.1 | 0.0 | PREDICTED: snRNA-activating protein complex subunit 4-like isoform X2 | ||||
TrEMBL | M0TBT6 | 0.0 | M0TBT6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P31410_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-157 | myb domain protein 4r1 |