PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P31350_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 33111.8 Da PI: 8.7722 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.8e-53 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhP+d+elv++yL+ k++g+ ++ + v+ +vd++k+ePwdLp+++ + kewyfFs+rd+kyatg+r+nrat sgyWk GSMUA_Achr6P31350_001 11 LPPGFRFHPRDDELVCDYLAVKLAGDGgrgsFHGSAVMVDVDLNKCEPWDLPATACVGGKEWYFFSHRDRKYATGQRTNRATVSGYWK 98 79**********************9998888777789***************7777799***************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v + kg lvg++ktLvf++grapkg+ktdWvmheyr+ GSMUA_Achr6P31350_001 99 ATGKDRPVAR-KGLLVGMRKTLVFHQGRAPKGKKTDWVMHEYRM 141 *********9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-62 | 2 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.218 | 11 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-26 | 12 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MSMLSMVEAE LPPGFRFHPR DDELVCDYLA VKLAGDGGRG SFHGSAVMVD VDLNKCEPWD 60 LPATACVGGK EWYFFSHRDR KYATGQRTNR ATVSGYWKAT GKDRPVARKG LLVGMRKTLV 120 FHQGRAPKGK KTDWVMHEYR MEGSDATPKS PFKEDWVLCR VLYKSRRIST KPTMETSHDD 180 SGSQSLPALM DNYITFDQTP LNLEGFEQVP CFSSPTPHLP SVERGMPLTK CLIQRGGLPE 240 LSAGLNQLTA DRKVSRTILN HLAKVEGDPK REMVPNLAEG GLGGYLTHSG LPSTWNPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 7 | 165 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406722.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 5e-94 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M0TBT0 | 0.0 | M0TBT0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P31350_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-96 | NAC domain containing protein 1 |