PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P31340_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LSD | ||||||||
Protein Properties | Length: 123aa MW: 13268.4 Da PI: 8.5878 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 30.3 | 7.2e-10 | 1 | 19 | 7 | 25 |
zf-LSD1 7 lLsYPrGApsVRCalCdtV 25 +L+Y GA+sVRC++Cdt+ GSMUA_Achr6P31340_001 1 MLMYANGATSVRCSCCDTM 19 69***************96 PP | |||||||
2 | zf-LSD1 | 35 | 2.4e-11 | 33 | 56 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C +C+ +L+YP+GAp V+Ca+C+ GSMUA_Achr6P31340_001 33 CVQCHPILMYPYGAPCVKCAICNY 56 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.7E-9 | 1 | 21 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.4E-8 | 1 | 18 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.8E-7 | 30 | 58 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-10 | 33 | 57 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MLMYANGATS VRCSCCDTMN MTGSANQVAH LNCVQCHPIL MYPYGAPCVK CAICNYITNA 60 GMHNMRFPIH VAHRPNEPTP VPPSTSPSSR ASNMTVVVEN PMSVNENGKL VSNVVVGVTT 120 RKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019701999.1 | 2e-52 | protein LSD1 | ||||
Swissprot | Q2QMB3 | 4e-43 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | M0TBS9 | 4e-84 | M0TBS9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P31340_001 | 7e-85 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-36 | LSD family protein |
Publications ? help Back to Top | |||
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